Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   INQ00_RS05195 Genome accession   NZ_CP063110
Coordinates   1054632..1055243 (+) Length   203 a.a.
NCBI ID   WP_197546414.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1049632..1060243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS05165 (INQ00_05170) - 1050177..1050557 (+) 381 WP_197546412.1 hypothetical protein -
  INQ00_RS05170 (INQ00_05175) - 1050882..1052150 (+) 1269 WP_014064903.1 NRAMP family divalent metal transporter -
  INQ00_RS05175 (INQ00_05180) nudB 1052252..1052710 (+) 459 WP_197546413.1 dihydroneopterin triphosphate diphosphatase -
  INQ00_RS05180 (INQ00_05185) - 1052758..1053498 (+) 741 WP_005697071.1 YebC/PmpR family DNA-binding transcriptional regulator -
  INQ00_RS05185 (INQ00_05190) - 1053516..1053950 (+) 435 WP_049369189.1 hypothetical protein -
  INQ00_RS05190 (INQ00_05195) ruvC 1054001..1054573 (+) 573 WP_005697069.1 crossover junction endodeoxyribonuclease RuvC -
  INQ00_RS05195 (INQ00_05200) ruvA 1054632..1055243 (+) 612 WP_197546414.1 Holliday junction branch migration protein RuvA Machinery gene
  INQ00_RS05200 (INQ00_05205) ruvB 1055257..1056264 (+) 1008 WP_041918230.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  INQ00_RS05205 (INQ00_05210) - 1056320..1056631 (-) 312 WP_049368010.1 DUF5339 domain-containing protein -
  INQ00_RS05210 (INQ00_05215) - 1057090..1058655 (+) 1566 WP_054418270.1 cytochrome ubiquinol oxidase subunit I -
  INQ00_RS05215 (INQ00_05220) cydB 1058670..1059809 (+) 1140 WP_197546415.1 cytochrome d ubiquinol oxidase subunit II -
  INQ00_RS05220 (INQ00_05225) - 1059821..1059919 (+) 99 WP_101494276.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  INQ00_RS05225 (INQ00_05230) ybgE 1059922..1060209 (+) 288 WP_049381656.1 cyd operon protein YbgE -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22540.36 Da        Isoelectric Point: 7.3192

>NTDB_id=436332 INQ00_RS05195 WP_197546414.1 1054632..1055243(+) (ruvA) [Haemophilus parainfluenzae strain M1C160_1]
MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGKETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQVESSA
DEAVAALVALGYKPTDAEKMVKKVAKTDLSSEQLIREALKAAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=436332 INQ00_RS05195 WP_197546414.1 1054632..1055243(+) (ruvA) [Haemophilus parainfluenzae strain M1C160_1]
ATGATCGGTCGTTTAAAAGGCATCTTATTAGAAAAACAACCACCTGAAATTTTGCTTGATGTACAAGGTGTCGGTTACGA
ATTATTGTTACCGATGACCAGTTTTTATGACTTACCTGAAATTGGGAAAGAAACTACTTTATTTACCCATCTTGTTGTGC
GTGAAGATGCTCATCTTCTTTTTGGATTTGCCCAAAAAACTGACCGCACTTTATTCCGTGAATTAATTAAAACTAATGGT
GTTGGTCCTAAATTGGCACTCGCAATTTTATCTGCAATGTCAGTAGAGCAGTTTGCTTACGCTATTGAACGAGAAGAACT
GTCGAAATTAGTTAAAATTCCTGGTGTGGGCAAGAAAACGGCTGAACGCTTATTGGTAGAGTTAAAAGGGAAGTTTAAAG
ATGTTCGCCAAAGTGATTTCTTTGTGGAGAGCAAGCATATTCCTTCAACTTCAGAATTACGTCAAGTGGAGAGCTCAGCT
GATGAAGCGGTTGCTGCATTGGTTGCGTTAGGTTATAAACCAACCGACGCTGAAAAAATGGTGAAAAAAGTAGCTAAAAC
TGACTTGAGCAGTGAGCAATTAATTCGCGAAGCCTTAAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(160-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.493

100

0.379