Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   HIB_RS06025 Genome accession   NC_016809
Coordinates   1179872..1180219 (+) Length   115 a.a.
NCBI ID   WP_015701999.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1174872..1185219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS06010 (HIB_11430) - 1176618..1178177 (+) 1560 WP_015701998.1 phosphoethanolamine transferase -
  HIB_RS06015 (HIB_11440) lspA 1178247..1178762 (+) 516 WP_005664259.1 signal peptidase II -
  HIB_RS06020 (HIB_11450) ispH 1178759..1179703 (+) 945 WP_005647895.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HIB_RS06025 (HIB_11470) comE1/comEA 1179872..1180219 (+) 348 WP_015701999.1 helix-hairpin-helix domain-containing protein Machinery gene
  HIB_RS06030 (HIB_11480) - 1180266..1181024 (-) 759 WP_015702000.1 DeoR/GlpR family DNA-binding transcription regulator -
  HIB_RS06035 (HIB_11490) ltnD 1181195..1182100 (+) 906 WP_015702001.1 L-threonate dehydrogenase -
  HIB_RS06040 (HIB_11500) otnK 1182103..1183344 (+) 1242 WP_015702002.1 3-oxo-tetronate kinase -
  HIB_RS06045 (HIB_11510) otnC 1183341..1183973 (+) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  HIB_RS06050 (HIB_11520) otnI 1183976..1184752 (+) 777 WP_005647880.1 2-oxo-tetronate isomerase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12431.20 Da        Isoelectric Point: 8.5047

>NTDB_id=43620 HIB_RS06025 WP_015701999.1 1179872..1180219(+) (comE1/comEA) [Haemophilus influenzae 10810]
MKLMKTLFTSVVLYGSLVVSSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=43620 HIB_RS06025 WP_015701999.1 1179872..1180219(+) (comE1/comEA) [Haemophilus influenzae 10810]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTATGGTTCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374
  comEA Vibrio cholerae C6706

39.091

95.652

0.374
  comEA Vibrio cholerae strain A1552

39.091

95.652

0.374

Multiple sequence alignment