Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HDB52_RS11480 Genome accession   NZ_CP051132
Coordinates   2395113..2395643 (+) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Enterobacter hormaechei strain AMS-38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2395802..2408504 2395113..2395643 flank 159


Gene organization within MGE regions


Location: 2395113..2408504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HDB52_RS11480 ssb 2395113..2395643 (+) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HDB52_RS11485 - 2395802..2397049 (+) 1248 WP_047058417.1 site-specific integrase -
  HDB52_RS11490 - 2397036..2398574 (+) 1539 WP_048984036.1 site-specific integrase -
  HDB52_RS11495 - 2398591..2400624 (+) 2034 WP_032646881.1 integrase -
  HDB52_RS25690 - 2400617..2401036 (+) 420 WP_032646882.1 hypothetical protein -
  HDB52_RS11505 - 2401683..2402834 (-) 1152 WP_032646884.1 response regulator -
  HDB52_RS11510 - 2402831..2403295 (-) 465 WP_032646885.1 hypothetical protein -
  HDB52_RS11515 - 2403296..2406628 (-) 3333 WP_032646886.1 hypothetical protein -
  HDB52_RS11520 - 2407115..2407912 (-) 798 Protein_2242 IS5 family transposase -
  HDB52_RS11525 - 2408223..2408504 (-) 282 WP_003860282.1 YjcB family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=436131 HDB52_RS11480 WP_006177466.1 2395113..2395643(+) (ssb) [Enterobacter hormaechei strain AMS-38]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=436131 HDB52_RS11480 WP_006177466.1 2395113..2395643(+) (ssb) [Enterobacter hormaechei strain AMS-38]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGAGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGACCAATCCGGCGCTGAGAAGTACACCACGGAAGTGGTGGTGAATGTGGG
CGGCACCATGCAAATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAATCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCTCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCG
GCACCGTCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364