Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD   Type   Machinery gene
Locus tag   HIB_RS02865 Genome accession   NC_016809
Coordinates   552223..552636 (-) Length   137 a.a.
NCBI ID   WP_015701647.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 547223..557636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS02835 (HIB_05390) - 547606..547878 (-) 273 WP_005630954.1 HU family DNA-binding protein -
  HIB_RS02840 (HIB_05400) - 548018..548608 (-) 591 WP_015701643.1 YjaG family protein -
  HIB_RS02845 (HIB_05410) nudC 548644..549438 (-) 795 WP_015701644.1 NAD(+) diphosphatase -
  HIB_RS02850 (HIB_05420) nfuA 549505..550101 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  HIB_RS02855 (HIB_05430) - 550177..550863 (-) 687 WP_015701645.1 ComF family protein -
  HIB_RS02860 (HIB_05440) comE 550876..552213 (-) 1338 WP_015701646.1 type IV pilus secretin PilQ family protein Machinery gene
  HIB_RS02865 (HIB_05450) comD 552223..552636 (-) 414 WP_015701647.1 pilus assembly protein PilP Machinery gene
  HIB_RS02870 (HIB_05460) comC 552633..553154 (-) 522 WP_015701648.1 competence protein ComC Machinery gene
  HIB_RS02875 (HIB_05470) comB 553151..553657 (-) 507 WP_011272049.1 competence protein ComB Machinery gene
  HIB_RS02880 (HIB_05480) comA 553658..554455 (-) 798 WP_005693722.1 competence protein A Machinery gene
  HIB_RS02885 (HIB_05490) - 554554..557148 (+) 2595 WP_015701649.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15707.91 Da        Isoelectric Point: 4.5625

>NTDB_id=43601 HIB_RS02865 WP_015701647.1 552223..552636(-) (comD) [Haemophilus influenzae 10810]
MKHWFFLIILFFMNCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKVVGVVISKD
KAFALLQDQGLQIYIVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF

Nucleotide


Download         Length: 414 bp        

>NTDB_id=43601 HIB_RS02865 WP_015701647.1 552223..552636(-) (comD) [Haemophilus influenzae 10810]
ATGAAACATTGGTTTTTCCTGATTATATTATTTTTTATGAATTGTAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAAGTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACATTGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(26-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD Haemophilus influenzae 86-028NP

98.54

100

0.985
  comD Haemophilus influenzae Rd KW20

97.81

100

0.978

Multiple sequence alignment