Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HIB_RS02880 Genome accession   NC_016809
Coordinates   553658..554455 (-) Length   265 a.a.
NCBI ID   WP_005693722.1    Uniprot ID   -
Organism   Haemophilus influenzae 10810     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 548658..559455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIB_RS02850 (HIB_05420) nfuA 549505..550101 (-) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -
  HIB_RS02855 (HIB_05430) - 550177..550863 (-) 687 WP_015701645.1 ComF family protein -
  HIB_RS02860 (HIB_05440) comE 550876..552213 (-) 1338 WP_015701646.1 type IV pilus secretin PilQ family protein Machinery gene
  HIB_RS02865 (HIB_05450) comD 552223..552636 (-) 414 WP_015701647.1 pilus assembly protein PilP Machinery gene
  HIB_RS02870 (HIB_05460) comC 552633..553154 (-) 522 WP_015701648.1 competence protein ComC Machinery gene
  HIB_RS02875 (HIB_05470) comB 553151..553657 (-) 507 WP_011272049.1 competence protein ComB Machinery gene
  HIB_RS02880 (HIB_05480) comA 553658..554455 (-) 798 WP_005693722.1 competence protein A Machinery gene
  HIB_RS02885 (HIB_05490) - 554554..557148 (+) 2595 WP_015701649.1 penicillin-binding protein 1A -
  HIB_RS02890 (HIB_05500) - 557225..558070 (+) 846 WP_015701650.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  HIB_RS02895 (HIB_05510) - 558223..558552 (+) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  HIB_RS02900 (HIB_05520) recR 558685..559287 (+) 603 WP_005626527.1 recombination mediator RecR -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31541.85 Da        Isoelectric Point: 5.9495

>NTDB_id=43604 HIB_RS02880 WP_005693722.1 553658..554455(-) (comA) [Haemophilus influenzae 10810]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSSAQTYLQDFQPFNINILDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=43604 HIB_RS02880 WP_005693722.1 553658..554455(-) (comA) [Haemophilus influenzae 10810]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
GCGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAATATTAATATATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACGCCATTACCAGAAAACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

100

100

1
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment