Detailed information
Bioinformatically predicted
Overview
| Name | comYD | Type | Machinery gene |
| Locus tag | GRB95_RS01090 | Genome accession | NZ_CP051004 |
| Coordinates | 188977..189405 (+) | Length | 142 a.a. |
| NCBI ID | WP_000793381.1 | Uniprot ID | A0A8B4RCN7 |
| Organism | Streptococcus agalactiae 515 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 190266..235946 | 188977..189405 | flank | 861 |
Gene organization within MGE regions
Location: 188977..235946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GRB95_RS01090 (GRB95_01090) | comYD | 188977..189405 (+) | 429 | WP_000793381.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| GRB95_RS01095 (GRB95_01095) | comGE | 189377..189676 (+) | 300 | WP_001867089.1 | competence type IV pilus minor pilin ComGE | - |
| GRB95_RS01100 (GRB95_01100) | comGF | 189630..190091 (+) | 462 | WP_001874060.1 | competence type IV pilus minor pilin ComGF | - |
| GRB95_RS01105 (GRB95_01105) | comGG | 190069..190440 (+) | 372 | WP_000601104.1 | competence type IV pilus minor pilin ComGG | - |
| GRB95_RS01110 (GRB95_01110) | comYH | 190555..191529 (+) | 975 | WP_001008570.1 | class I SAM-dependent methyltransferase | Machinery gene |
| GRB95_RS01115 (GRB95_01115) | - | 191561..192754 (+) | 1194 | WP_000047535.1 | acetate kinase | - |
| GRB95_RS01120 (GRB95_01120) | - | 192905..193111 (+) | 207 | WP_000798242.1 | helix-turn-helix transcriptional regulator | - |
| GRB95_RS01125 (GRB95_01125) | - | 193170..193307 (+) | 138 | WP_001867090.1 | hypothetical protein | - |
| GRB95_RS01130 (GRB95_01130) | - | 193348..193803 (+) | 456 | WP_000905674.1 | hypothetical protein | - |
| GRB95_RS01135 (GRB95_01135) | - | 193872..194537 (+) | 666 | WP_000008111.1 | type II CAAX endopeptidase family protein | - |
| GRB95_RS01140 (GRB95_01140) | proC | 194558..195328 (-) | 771 | WP_001867096.1 | pyrroline-5-carboxylate reductase | - |
| GRB95_RS01145 (GRB95_01145) | pepA | 195398..196465 (-) | 1068 | WP_001281321.1 | glutamyl aminopeptidase | - |
| GRB95_RS01150 (GRB95_01150) | - | 196650..196889 (-) | 240 | WP_000660181.1 | hypothetical protein | - |
| GRB95_RS01155 (GRB95_01155) | - | 197050..197334 (+) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| GRB95_RS01160 (GRB95_01160) | - | 197331..197654 (+) | 324 | WP_000601792.1 | thioredoxin family protein | - |
| GRB95_RS01165 (GRB95_01165) | ytpR | 197687..198313 (+) | 627 | WP_000578331.1 | YtpR family tRNA-binding protein | - |
| GRB95_RS01170 (GRB95_01170) | - | 198367..199083 (-) | 717 | WP_000186183.1 | class I SAM-dependent methyltransferase | - |
| GRB95_RS01175 (GRB95_01175) | ssbA | 199164..199559 (+) | 396 | WP_000282450.1 | single-stranded DNA-binding protein | Machinery gene |
| GRB95_RS01180 (GRB95_01180) | - | 199682..200326 (+) | 645 | WP_000416612.1 | HAD family hydrolase | - |
| GRB95_RS01185 (GRB95_01185) | - | 200353..202098 (+) | 1746 | WP_000930334.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| GRB95_RS01190 (GRB95_01190) | - | 202079..202819 (+) | 741 | WP_000697630.1 | LytTR family transcriptional regulator DNA-binding domain-containing protein | - |
| GRB95_RS01195 (GRB95_01195) | - | 202989..203444 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| GRB95_RS01200 (GRB95_01200) | lrgB | 203446..204174 (+) | 729 | WP_000421727.1 | antiholin-like protein LrgB | - |
| GRB95_RS01205 (GRB95_01205) | - | 204417..206045 (+) | 1629 | WP_000170504.1 | ABC transporter substrate-binding protein | - |
| GRB95_RS01210 (GRB95_01210) | - | 206158..207135 (+) | 978 | WP_000680644.1 | ABC transporter permease | - |
| GRB95_RS01215 (GRB95_01215) | - | 207132..207953 (+) | 822 | WP_000603397.1 | ABC transporter permease | - |
| GRB95_RS01220 (GRB95_01220) | - | 207965..208768 (+) | 804 | WP_000140979.1 | ABC transporter ATP-binding protein | - |
| GRB95_RS01225 (GRB95_01225) | - | 208752..209378 (+) | 627 | WP_000171304.1 | ABC transporter ATP-binding protein | - |
| GRB95_RS01230 (GRB95_01230) | treP | 209660..211690 (+) | 2031 | WP_000434610.1 | PTS system trehalose-specific EIIBC component | - |
| GRB95_RS01235 (GRB95_01235) | treC | 211912..213537 (+) | 1626 | WP_000151014.1 | alpha,alpha-phosphotrehalase | - |
| GRB95_RS01240 (GRB95_01240) | - | 213757..215793 (+) | 2037 | WP_000228178.1 | BglG family transcription antiterminator | - |
| GRB95_RS01245 (GRB95_01245) | - | 215796..216080 (+) | 285 | WP_000944235.1 | PTS sugar transporter subunit IIB | - |
| GRB95_RS01250 (GRB95_01250) | - | 216093..217448 (+) | 1356 | WP_000677353.1 | PTS ascorbate transporter subunit IIC | - |
| GRB95_RS01255 (GRB95_01255) | - | 217451..218308 (+) | 858 | WP_000203492.1 | transketolase | - |
| GRB95_RS01260 (GRB95_01260) | - | 218305..219234 (+) | 930 | WP_001203828.1 | transketolase C-terminal domain-containing protein | - |
| GRB95_RS01265 (GRB95_01265) | - | 219343..220602 (+) | 1260 | WP_001203074.1 | ferric reductase-like transmembrane domain-containing protein | - |
| GRB95_RS01270 (GRB95_01270) | rpsO | 220690..220959 (+) | 270 | WP_001018249.1 | 30S ribosomal protein S15 | - |
| GRB95_RS01275 (GRB95_01275) | pnp | 221340..223469 (+) | 2130 | WP_000043857.1 | polyribonucleotide nucleotidyltransferase | - |
| GRB95_RS01280 (GRB95_01280) | - | 223471..224223 (+) | 753 | WP_000204780.1 | SseB family protein | - |
| GRB95_RS01285 (GRB95_01285) | cysE | 224232..224816 (+) | 585 | WP_000539954.1 | serine O-acetyltransferase | - |
| GRB95_RS01290 (GRB95_01290) | - | 224826..225008 (+) | 183 | WP_000656477.1 | hypothetical protein | - |
| GRB95_RS01295 (GRB95_01295) | cysS | 225005..226348 (+) | 1344 | WP_000591126.1 | cysteine--tRNA ligase | - |
| GRB95_RS01300 (GRB95_01300) | - | 226341..226727 (+) | 387 | WP_000568029.1 | Mini-ribonuclease 3 | - |
| GRB95_RS01305 (GRB95_01305) | rlmB | 226830..227585 (+) | 756 | WP_000178019.1 | 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB | - |
| GRB95_RS01310 (GRB95_01310) | - | 227582..228100 (+) | 519 | WP_000716636.1 | NYN domain-containing protein | - |
| GRB95_RS01315 (GRB95_01315) | - | 228193..229053 (+) | 861 | WP_000143135.1 | DegV family protein | - |
| GRB95_RS01320 (GRB95_01320) | - | 229591..229710 (+) | 120 | Protein_207 | helix-turn-helix domain-containing protein | - |
| GRB95_RS01325 (GRB95_01325) | - | 230028..231194 (-) | 1167 | WP_000160598.1 | IS30-like element ISSag9 family transposase | - |
| GRB95_RS01330 (GRB95_01330) | rplM | 231495..231941 (+) | 447 | WP_001867156.1 | 50S ribosomal protein L13 | - |
| GRB95_RS01335 (GRB95_01335) | rpsI | 231962..232354 (+) | 393 | WP_000035940.1 | 30S ribosomal protein S9 | - |
| GRB95_RS01340 (GRB95_01340) | - | 232500..233654 (-) | 1155 | WP_000110711.1 | site-specific integrase | - |
| GRB95_RS01345 (GRB95_01345) | - | 233709..234227 (-) | 519 | WP_000181342.1 | helix-turn-helix transcriptional regulator | - |
| GRB95_RS01350 (GRB95_01350) | - | 234374..234658 (+) | 285 | WP_001287945.1 | hypothetical protein | - |
| GRB95_RS01355 (GRB95_01355) | - | 234670..235524 (+) | 855 | WP_000005759.1 | phage replisome organizer N-terminal domain-containing protein | - |
| GRB95_RS01360 (GRB95_01360) | - | 235535..235825 (+) | 291 | WP_000158581.1 | DUF5962 family protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 16493.15 Da Isoelectric Point: 10.0345
>NTDB_id=435883 GRB95_RS01090 WP_000793381.1 188977..189405(+) (comYD) [Streptococcus agalactiae 515]
MKNLLLKCKDKKVKAFTLLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHN
YLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN
MKNLLLKCKDKKVKAFTLLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHN
YLENTYERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN
Nucleotide
Download Length: 429 bp
>NTDB_id=435883 GRB95_RS01090 WP_000793381.1 188977..189405(+) (comYD) [Streptococcus agalactiae 515]
ATGAAAAATTTATTGTTAAAATGTAAGGATAAGAAGGTTAAAGCATTTACACTTTTAGAGAGCCTTATTGTATTATCAGT
AGTGGCATTTATGACGTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATAT
CCTTTGAACATCTTTATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAAT
TATCTCGAAAATACTTATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGC
TAATGGAGGGAATTCAAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTTACGTATCAATTATATATAGGAA
GTGGTAATTATCGTAAGAAAGAAAATTAG
ATGAAAAATTTATTGTTAAAATGTAAGGATAAGAAGGTTAAAGCATTTACACTTTTAGAGAGCCTTATTGTATTATCAGT
AGTGGCATTTATGACGTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATAT
CCTTTGAACATCTTTATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAAT
TATCTCGAAAATACTTATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGC
TAATGGAGGGAATTCAAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTTACGTATCAATTATATATAGGAA
GTGGTAATTATCGTAAGAAAGAAAATTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYD | Streptococcus mutans UA140 |
52.273 |
92.958 |
0.486 |
| comYD | Streptococcus mutans UA159 |
52.273 |
92.958 |
0.486 |
| comYD | Streptococcus gordonii str. Challis substr. CH1 |
43.662 |
100 |
0.437 |
| comGD/cglD | Streptococcus mitis NCTC 12261 |
41.045 |
94.366 |
0.387 |
| comGD/cglD | Streptococcus pneumoniae TIGR4 |
43.307 |
89.437 |
0.387 |
| comGD/cglD | Streptococcus mitis SK321 |
43.307 |
89.437 |
0.387 |
| comGD/cglD | Streptococcus pneumoniae Rx1 |
42.52 |
89.437 |
0.38 |
| comGD/cglD | Streptococcus pneumoniae D39 |
42.52 |
89.437 |
0.38 |
| comGD/cglD | Streptococcus pneumoniae R6 |
42.52 |
89.437 |
0.38 |