Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | FOB43_RS09355 | Genome accession | NZ_CP050992 |
| Coordinates | 1966426..1967562 (-) | Length | 378 a.a. |
| NCBI ID | WP_168227627.1 | Uniprot ID | - |
| Organism | Chromobacterium violaceum strain FDAARGOS_635 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1961426..1972562
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB43_RS09335 (FOB43_09335) | - | 1961826..1962611 (+) | 786 | WP_043613400.1 | TIGR00266 family protein | - |
| FOB43_RS09340 (FOB43_09340) | - | 1962618..1963139 (-) | 522 | WP_168227626.1 | 2'-5' RNA ligase family protein | - |
| FOB43_RS09345 (FOB43_09345) | - | 1963139..1964752 (-) | 1614 | WP_052942147.1 | response regulator | - |
| FOB43_RS09350 (FOB43_09350) | - | 1964787..1966400 (-) | 1614 | WP_052262685.1 | response regulator | - |
| FOB43_RS09355 (FOB43_09355) | pilU | 1966426..1967562 (-) | 1137 | WP_168227627.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| FOB43_RS09360 (FOB43_09360) | pilT | 1967625..1968662 (-) | 1038 | WP_011133734.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| FOB43_RS09365 (FOB43_09365) | - | 1968800..1969495 (+) | 696 | WP_168227628.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| FOB43_RS09370 (FOB43_09370) | proC | 1969550..1970353 (+) | 804 | WP_168227629.1 | pyrroline-5-carboxylate reductase | - |
| FOB43_RS09375 (FOB43_09375) | - | 1970363..1970944 (+) | 582 | WP_045051079.1 | YggT family protein | - |
| FOB43_RS09380 (FOB43_09380) | - | 1971024..1971329 (+) | 306 | WP_011133730.1 | c-type cytochrome | - |
| FOB43_RS09385 (FOB43_09385) | dksA | 1971613..1972023 (+) | 411 | WP_011133729.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 42291.46 Da Isoelectric Point: 6.0188
>NTDB_id=435793 FOB43_RS09355 WP_168227627.1 1966426..1967562(-) (pilU) [Chromobacterium violaceum strain FDAARGOS_635]
MEKDQASKFIHDLLKHATGKNASDIFIAAEFPPAMKIDGKITPVAPQALTALQSKELVRAVMNDRQTEEFEAKKEANFAI
NPPGVGRFRVSAFVQQGMVGMVLRKINTEIPTFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSNNQD
HIITIEDPIEYVHTHKKSIVTQREIGVDTENWEVALKNTLRQAPDVILMGEIRDRETMAYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRAIISQRLVPHKSGRGRVAAVEILLNSPLVSDMVFKGEIAGLKEVMGRSREAG
MQTFDQSLFDLYEAELITYEDALRNADSINDLRLRIKLYSESARNRDPLEGIDHLDIV
MEKDQASKFIHDLLKHATGKNASDIFIAAEFPPAMKIDGKITPVAPQALTALQSKELVRAVMNDRQTEEFEAKKEANFAI
NPPGVGRFRVSAFVQQGMVGMVLRKINTEIPTFDQLNLPEVLKDIALIKRGLVIFVGGTGSGKSTSLAALVDWRNSNNQD
HIITIEDPIEYVHTHKKSIVTQREIGVDTENWEVALKNTLRQAPDVILMGEIRDRETMAYGLQFAETGHLCLATLHANNA
NQALDRILNFFPEERHQQVLMDLSLNMRAIISQRLVPHKSGRGRVAAVEILLNSPLVSDMVFKGEIAGLKEVMGRSREAG
MQTFDQSLFDLYEAELITYEDALRNADSINDLRLRIKLYSESARNRDPLEGIDHLDIV
Nucleotide
Download Length: 1137 bp
>NTDB_id=435793 FOB43_RS09355 WP_168227627.1 1966426..1967562(-) (pilU) [Chromobacterium violaceum strain FDAARGOS_635]
ATGGAAAAAGACCAGGCCTCCAAATTCATCCACGACCTGCTCAAGCATGCGACGGGAAAGAACGCCTCCGACATCTTCAT
CGCCGCCGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGGCGCTGACCGCCCTGCAGA
GCAAGGAACTGGTGCGCGCGGTGATGAACGACCGCCAGACCGAGGAGTTCGAGGCGAAGAAGGAAGCCAACTTCGCCATC
AACCCGCCCGGCGTCGGCCGTTTCCGCGTCAGCGCCTTCGTCCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCACCTTCGACCAGCTCAACCTGCCCGAGGTGCTGAAGGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCTCCGGCAAGTCCACCTCGCTGGCCGCGCTGGTGGACTGGCGCAACAGCAACAACCAGGAC
CACATCATCACGATCGAAGACCCGATCGAGTACGTGCACACCCACAAGAAGTCCATCGTCACCCAGCGCGAGATCGGCGT
GGACACCGAGAACTGGGAGGTCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGCGAGATCCGCG
ACCGCGAAACCATGGCCTACGGCCTGCAGTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAACTTCTTCCCCGAAGAGCGCCACCAGCAAGTGCTGATGGACCTGTCGCTGAACAT
GCGCGCCATCATTTCGCAGCGGCTGGTGCCGCACAAGTCCGGCCGCGGCCGGGTGGCGGCGGTGGAGATCCTGCTCAACA
GCCCGCTGGTGTCGGACATGGTGTTCAAGGGCGAGATCGCCGGGCTGAAGGAGGTGATGGGACGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGACCTGTACGAGGCCGAGCTGATCACTTACGAGGATGCGCTGCGCAACGCCGA
CTCCATCAACGACCTGCGCCTGAGAATCAAGCTGTACAGCGAGAGCGCCCGCAACCGGGACCCGCTGGAAGGCATAGACC
ACCTGGATATCGTCTGA
ATGGAAAAAGACCAGGCCTCCAAATTCATCCACGACCTGCTCAAGCATGCGACGGGAAAGAACGCCTCCGACATCTTCAT
CGCCGCCGAATTTCCGCCGGCGATGAAGATAGACGGCAAGATCACGCCGGTGGCGCCGCAGGCGCTGACCGCCCTGCAGA
GCAAGGAACTGGTGCGCGCGGTGATGAACGACCGCCAGACCGAGGAGTTCGAGGCGAAGAAGGAAGCCAACTTCGCCATC
AACCCGCCCGGCGTCGGCCGTTTCCGCGTCAGCGCCTTCGTCCAGCAGGGCATGGTGGGCATGGTGCTGCGCAAGATCAA
CACCGAGATCCCCACCTTCGACCAGCTCAACCTGCCCGAGGTGCTGAAGGACATCGCGCTGATCAAGCGCGGCCTGGTGA
TCTTCGTCGGCGGCACCGGCTCCGGCAAGTCCACCTCGCTGGCCGCGCTGGTGGACTGGCGCAACAGCAACAACCAGGAC
CACATCATCACGATCGAAGACCCGATCGAGTACGTGCACACCCACAAGAAGTCCATCGTCACCCAGCGCGAGATCGGCGT
GGACACCGAGAACTGGGAGGTCGCGCTGAAGAACACGCTGCGCCAGGCGCCGGACGTGATCCTGATGGGCGAGATCCGCG
ACCGCGAAACCATGGCCTACGGCCTGCAGTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACGCCAACAACGCC
AACCAGGCGCTGGACCGCATCCTCAACTTCTTCCCCGAAGAGCGCCACCAGCAAGTGCTGATGGACCTGTCGCTGAACAT
GCGCGCCATCATTTCGCAGCGGCTGGTGCCGCACAAGTCCGGCCGCGGCCGGGTGGCGGCGGTGGAGATCCTGCTCAACA
GCCCGCTGGTGTCGGACATGGTGTTCAAGGGCGAGATCGCCGGGCTGAAGGAGGTGATGGGACGCTCGCGCGAGGCCGGC
ATGCAGACTTTCGACCAATCGCTGTTCGACCTGTACGAGGCCGAGCTGATCACTTACGAGGATGCGCTGCGCAACGCCGA
CTCCATCAACGACCTGCGCCTGAGAATCAAGCTGTACAGCGAGAGCGCCCGCAACCGGGACCCGCTGGAAGGCATAGACC
ACCTGGATATCGTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
60.857 |
92.593 |
0.563 |
| pilU | Acinetobacter baylyi ADP1 |
55.191 |
96.825 |
0.534 |
| pilU | Vibrio cholerae strain A1552 |
52.991 |
92.857 |
0.492 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.51 |
89.153 |
0.397 |
| pilT | Pseudomonas aeruginosa PAK |
40.653 |
89.153 |
0.362 |