Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | PMU_RS01720 | Genome accession | NC_016808 |
| Coordinates | 347260..347712 (-) | Length | 150 a.a. |
| NCBI ID | WP_012340854.1 | Uniprot ID | W0R5B1 |
| Organism | Pasteurella multocida 36950 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 329772..346724 | 347260..347712 | flank | 536 |
Gene organization within MGE regions
Location: 329772..347712
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PMU_RS01615 (Pmu_03320) | - | 329772..330482 (+) | 711 | WP_006248874.1 | hypothetical protein | - |
| PMU_RS01620 (Pmu_03330) | - | 331021..331788 (-) | 768 | WP_012340839.1 | aldo/keto reductase | - |
| PMU_RS01625 (Pmu_03340) | - | 331739..332107 (+) | 369 | WP_308700758.1 | DUF6803 family protein | - |
| PMU_RS01630 (Pmu_03350) | - | 332289..332744 (+) | 456 | WP_005612095.1 | DUF411 domain-containing protein | - |
| PMU_RS01635 (Pmu_03360) | - | 332758..334305 (+) | 1548 | WP_006248871.1 | multicopper oxidase family protein | - |
| PMU_RS01640 (Pmu_03370) | - | 334395..334529 (-) | 135 | WP_015587091.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| PMU_RS01645 (Pmu_03380) | - | 334639..334818 (+) | 180 | WP_006248870.1 | hypothetical protein | - |
| PMU_RS01650 (Pmu_03390) | - | 334867..335385 (+) | 519 | WP_006248869.1 | hypothetical protein | - |
| PMU_RS01655 (Pmu_03400) | tetR(H) | 335388..336011 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| PMU_RS01660 (Pmu_03410) | aadB | 336198..336731 (+) | 534 | WP_000381802.1 | aminoglycoside nucleotidyltransferase ANT(2'')-Ia | - |
| PMU_RS01665 (Pmu_03420) | - | 336789..337657 (+) | 869 | Protein_312 | AadA family aminoglycoside 3''-O-nucleotidyltransferase | - |
| PMU_RS01670 (Pmu_03440) | - | 337657..338484 (+) | 828 | WP_001007673.1 | oxacillin-hydrolyzing class D beta-lactamase OXA-2 | - |
| PMU_RS01675 (Pmu_03450) | - | 338575..339279 (+) | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| PMU_RS01680 (Pmu_03460) | msr(E) | 339642..341117 (+) | 1476 | WP_000052512.1 | ABC-F type ribosomal protection protein Msr(E) | - |
| PMU_RS01685 (Pmu_03470) | - | 341173..342057 (+) | 885 | WP_014325835.1 | Mph(E) family macrolide 2'-phosphotransferase | - |
| PMU_RS01690 (Pmu_03480) | - | 342141..342845 (+) | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| PMU_RS11170 | - | 342851..343096 (+) | 246 | WP_025329032.1 | hypothetical protein | - |
| PMU_RS01695 (Pmu_03490) | tetR(H) | 343099..343722 (-) | 624 | WP_006248868.1 | tetracycline resistance transcriptional repressor TetR(H) | - |
| PMU_RS01700 (Pmu_03500) | tet(H) | 343814..345016 (+) | 1203 | WP_014325836.1 | tetracycline efflux MFS transporter Tet(H) | - |
| PMU_RS01705 (Pmu_03510) | - | 345112..346422 (-) | 1311 | WP_011200814.1 | ISL3 family transposase | - |
| PMU_RS01710 (Pmu_03520) | - | 346422..346658 (-) | 237 | WP_230294061.1 | hypothetical protein | - |
| PMU_RS01715 (Pmu_03530) | - | 346765..346953 (-) | 189 | WP_011200812.1 | hypothetical protein | - |
| PMU_RS01720 (Pmu_03540) | ssb | 347260..347712 (-) | 453 | WP_012340854.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 17204.13 Da Isoelectric Point: 5.2733
>NTDB_id=43571 PMU_RS01720 WP_012340854.1 347260..347712(-) (ssb) [Pasteurella multocida 36950]
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRYAEICGQYLRKGSKIYIEG
KLRTRKWQDQNGQERYTTEIQGELLQMLDSRNATNSVDGQQSNYQAMSQSPKATHPQDLPMDNFDDDIPF
Nucleotide
Download Length: 453 bp
>NTDB_id=43571 PMU_RS01720 WP_012340854.1 347260..347712(-) (ssb) [Pasteurella multocida 36950]
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
ATGGCAGGAATCAATAAAGTGATTATTGTCGGTAATCTTGGCAACGATCCTGAAATGCGGACTATGCCTAATGGTGAAGC
AGTTGCTAATATTAGTGTGGCAACTTCTGAAAGTTGGACGGATAAAAATACCGGAGAACGTCGAGAAGTCACTGAATGGC
ATCGTATCGTTTTTTATCGCCGTTATGCTGAAATTTGTGGTCAGTACCTACGTAAAGGCTCTAAAATTTATATCGAAGGA
AAATTACGGACACGTAAGTGGCAAGACCAAAACGGGCAAGAGCGTTATACAACCGAAATCCAAGGTGAACTATTACAAAT
GTTAGATAGCCGTAATGCTACAAATAGCGTAGATGGACAACAATCTAACTATCAAGCTATGAGCCAATCTCCAAAAGCAA
CACATCCACAAGATTTACCAATGGATAACTTTGATGATGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
63.333 |
100 |
0.76 |
| ssb | Vibrio cholerae strain A1552 |
51.724 |
100 |
0.6 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.527 |
| ssb | Neisseria meningitidis MC58 |
45.087 |
100 |
0.52 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
31.818 |
100 |
0.373 |