Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   CLO1100_RS08560 Genome accession   NC_016791
Coordinates   2046703..2047611 (+) Length   302 a.a.
NCBI ID   WP_014313358.1    Uniprot ID   H2JJL1
Organism   Clostridium sp. BNL1100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2041703..2052611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLO1100_RS08550 (Clo1100_1773) - 2041716..2042906 (+) 1191 WP_014313356.1 aldo/keto reductase -
  CLO1100_RS08555 (Clo1100_1774) smc 2043047..2046619 (+) 3573 WP_014313357.1 chromosome segregation protein SMC -
  CLO1100_RS08560 (Clo1100_1775) pilA 2046703..2047611 (+) 909 WP_014313358.1 signal recognition particle-docking protein FtsY Machinery gene
  CLO1100_RS08565 (Clo1100_1776) - 2047639..2050470 (+) 2832 WP_014313359.1 UPF0182 family protein -
  CLO1100_RS08570 (Clo1100_1777) - 2050726..2052606 (+) 1881 WP_014313360.1 APC family permease -

Sequence

Protein


Download         Length: 302 a.a.        Molecular weight: 33041.27 Da        Isoelectric Point: 4.8989

>NTDB_id=43485 CLO1100_RS08560 WP_014313358.1 2046703..2047611(+) (pilA) [Clostridium sp. BNL1100]
MGFFDKLKEGLQKTRKSITEKIDQVLVSFGKVDEELFDELEEILITSDIGIETTMRVIEDLKEKVKERKIIDPKEVKGLL
KETLKEILEKGGNEMKLNTKPSVIIVIGVNGVGKTTSIGKIANLYKSQGKKVLLAAGDTFRAAAIDQLEVWAQRVGTEII
MQKEGSDPAAVIFDAVQAAKSRNADLLICDTAGRLHTKKNLMEELKKVSRVLDRELPGADKETLLVLDATTGQNAISQAK
TFSETSDITGIVLTKLDGTAKGGIVVAIKSELDIPVKLIGVGEQLDDLQKFDAEEFVEALFS

Nucleotide


Download         Length: 909 bp        

>NTDB_id=43485 CLO1100_RS08560 WP_014313358.1 2046703..2047611(+) (pilA) [Clostridium sp. BNL1100]
ATGGGATTTTTTGATAAACTTAAAGAAGGACTTCAAAAAACACGTAAAAGTATAACTGAAAAAATAGACCAGGTACTTGT
ATCTTTTGGAAAGGTAGACGAAGAACTTTTTGATGAACTTGAGGAGATATTGATTACTTCTGACATTGGAATTGAAACAA
CAATGCGGGTTATAGAGGACTTGAAGGAAAAAGTTAAAGAAAGGAAGATAATCGACCCAAAGGAGGTAAAAGGCCTGCTC
AAGGAGACACTTAAAGAGATACTGGAAAAGGGCGGTAATGAAATGAAGCTCAATACAAAACCGTCTGTCATTATAGTAAT
AGGAGTAAATGGAGTTGGAAAAACAACCTCTATAGGCAAAATTGCAAATCTGTATAAAAGTCAGGGTAAAAAAGTTTTAT
TAGCAGCAGGAGATACCTTCAGAGCTGCTGCCATTGATCAGCTGGAGGTATGGGCACAAAGAGTTGGTACTGAGATAATA
ATGCAAAAGGAGGGTTCGGACCCGGCAGCTGTTATATTTGATGCTGTTCAGGCTGCAAAATCCAGAAATGCAGACCTTTT
GATATGCGATACTGCAGGCAGGCTTCACACCAAAAAGAATCTTATGGAAGAGCTTAAAAAGGTTTCAAGGGTACTTGACA
GGGAACTTCCGGGAGCAGACAAGGAAACACTTCTGGTGCTTGACGCAACTACAGGTCAGAATGCCATATCACAGGCCAAA
ACTTTCAGCGAAACTTCTGATATTACTGGAATAGTATTAACAAAATTGGATGGAACCGCTAAAGGAGGAATAGTTGTAGC
CATAAAATCTGAGCTTGATATACCTGTAAAATTAATCGGTGTAGGAGAACAGCTGGATGACTTGCAGAAATTTGACGCAG
AGGAATTTGTAGAAGCCTTGTTTTCATAG

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(101-301)

SRP54-type protein, helical bundle domain (SRP54_N)

(19-84)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H2JJL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

48.515

100

0.487

Multiple sequence alignment