Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PADK2_RS30565 Genome accession   NC_018080
Coordinates   5078764..5079303 (-) Length   179 a.a.
NCBI ID   WP_003116248.1    Uniprot ID   Q59651
Organism   Pseudomonas aeruginosa DK2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5073764..5084303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PADK2_RS23495 (PADK2_23545) - 5074448..5076703 (-) 2256 WP_003104913.1 DUF1631 domain-containing protein -
  PADK2_RS23500 (PADK2_23550) nadC 5076989..5077837 (+) 849 WP_003116246.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PADK2_RS23510 (PADK2_23555) - 5078002..5078700 (-) 699 WP_023121720.1 hypothetical protein -
  PADK2_RS30565 (PADK2_23560) pilE 5078764..5079303 (-) 540 WP_003116248.1 pilin Machinery gene
  PADK2_RS23520 (PADK2_23565) pilB 5079532..5081136 (+) 1605 Protein_4704 type IV-A pilus assembly ATPase PilB -
  PADK2_RS31650 - 5082376..5082474 (+) 99 Protein_4706 hypothetical protein -
  PADK2_RS23535 (PADK2_23585) pilC 5082478..5083695 (+) 1218 WP_003116250.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18003.27 Da        Isoelectric Point: 4.6894

>NTDB_id=43476 PADK2_RS30565 WP_003116248.1 5078764..5079303(-) (pilE) [Pseudomonas aeruginosa DK2]
MTAQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTEGVGLAASAKTLIGDSSATAGELAASARVWNAQAGNAGAT
SKYVTSVQIAEATGEITVTFNAANVGNIPANSTLVFTPYVQNAAGAPTQLGASYASGVTGSIDWGCASDSNAVSSGTDRN
MPALTAGTLPARFAPSECR

Nucleotide


Download         Length: 540 bp        

>NTDB_id=43476 PADK2_RS30565 WP_003116248.1 5078764..5079303(-) (pilE) [Pseudomonas aeruginosa DK2]
ATGACAGCTCAGAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATTCTTGCTGCCGTCGCTTT
GCCGGCATATCAGGATTACACCATTCGTGCTCGCGTGACAGAGGGGGTTGGCCTGGCTGCCAGCGCCAAGACGCTTATTG
GCGATAGCTCTGCCACTGCCGGTGAGCTAGCCGCTTCGGCAAGGGTCTGGAATGCTCAAGCCGGTAACGCCGGTGCTACC
AGTAAGTATGTGACCTCTGTACAAATTGCAGAGGCGACTGGTGAAATCACTGTTACTTTCAATGCCGCAAACGTGGGTAA
TATTCCGGCTAACTCTACCCTGGTATTTACTCCCTATGTGCAGAATGCTGCCGGTGCCCCGACTCAATTGGGTGCCAGTT
ATGCTTCCGGTGTGACTGGCTCTATTGACTGGGGTTGTGCATCGGACTCCAACGCGGTTTCCAGTGGTACCGACCGCAAT
ATGCCTGCCCTGACTGCAGGTACCCTGCCGGCTCGTTTCGCTCCTAGCGAATGCCGCTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(36-179)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q59651

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

41.451

100

0.447
  pilA Ralstonia pseudosolanacearum GMI1000

44.444

100

0.447
  pilA2 Legionella pneumophila str. Paris

42.373

98.883

0.419
  pilA2 Legionella pneumophila strain ERS1305867

41.808

98.883

0.413
  comP Acinetobacter baylyi ADP1

38.889

100

0.391

Multiple sequence alignment