Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HC169_RS17415 | Genome accession | NZ_CP050788 |
| Coordinates | 3740651..3741115 (+) | Length | 154 a.a. |
| NCBI ID | WP_404839410.1 | Uniprot ID | - |
| Organism | Aeromonas media strain FiBL-4359 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 3701459..3746474 | 3740651..3741115 | within | 0 |
Gene organization within MGE regions
Location: 3701459..3746474
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HC169_RS17135 (HC169_17110) | - | 3701459..3705037 (-) | 3579 | WP_404839368.1 | tape measure protein | - |
| HC169_RS17140 (HC169_17115) | - | 3705097..3705846 (-) | 750 | WP_404839369.1 | hypothetical protein | - |
| HC169_RS17145 (HC169_17120) | - | 3705886..3706308 (-) | 423 | WP_130632531.1 | hypothetical protein | - |
| HC169_RS17150 (HC169_17125) | - | 3706305..3706862 (-) | 558 | WP_404839370.1 | hypothetical protein | - |
| HC169_RS17155 (HC169_17130) | - | 3706862..3707401 (-) | 540 | WP_404839371.1 | hypothetical protein | - |
| HC169_RS17160 (HC169_17135) | - | 3707410..3707721 (-) | 312 | WP_052100972.1 | head-tail connector protein | - |
| HC169_RS17165 (HC169_17140) | - | 3707724..3707897 (-) | 174 | WP_156139760.1 | hypothetical protein | - |
| HC169_RS17170 (HC169_17145) | - | 3707964..3709253 (-) | 1290 | WP_404839372.1 | phage major capsid protein | - |
| HC169_RS17175 (HC169_17150) | - | 3709322..3710257 (-) | 936 | WP_404839373.1 | S49 family peptidase | - |
| HC169_RS17180 (HC169_17155) | - | 3710245..3711498 (-) | 1254 | WP_033130573.1 | phage portal protein | - |
| HC169_RS17185 (HC169_17160) | - | 3711498..3711686 (-) | 189 | WP_033130572.1 | hypothetical protein | - |
| HC169_RS17190 (HC169_17165) | - | 3711680..3713401 (-) | 1722 | WP_404839374.1 | terminase large subunit | - |
| HC169_RS17195 (HC169_17170) | - | 3713411..3713896 (-) | 486 | WP_033130570.1 | phage terminase small subunit P27 family | - |
| HC169_RS17200 (HC169_17175) | - | 3713992..3714372 (-) | 381 | WP_404839375.1 | HNH endonuclease | - |
| HC169_RS17205 (HC169_17180) | - | 3714459..3714980 (-) | 522 | WP_404839376.1 | DUF2514 domain-containing protein | - |
| HC169_RS17210 (HC169_17185) | - | 3714977..3715348 (-) | 372 | WP_183149439.1 | DUF6527 family protein | - |
| HC169_RS17215 (HC169_17190) | - | 3715345..3715863 (-) | 519 | WP_404839377.1 | lysozyme | - |
| HC169_RS17220 (HC169_17195) | - | 3715850..3716173 (-) | 324 | WP_042649263.1 | phage holin, lambda family | - |
| HC169_RS17225 (HC169_17200) | - | 3716366..3716728 (-) | 363 | WP_404839378.1 | hypothetical protein | - |
| HC169_RS17230 (HC169_17205) | - | 3716771..3717154 (-) | 384 | WP_404839379.1 | hypothetical protein | - |
| HC169_RS17235 (HC169_17210) | - | 3717271..3717750 (-) | 480 | WP_404839380.1 | hypothetical protein | - |
| HC169_RS17240 (HC169_17215) | - | 3717777..3718109 (-) | 333 | WP_404839381.1 | Arc family DNA-binding protein | - |
| HC169_RS17245 (HC169_17220) | - | 3718263..3718427 (+) | 165 | WP_404839382.1 | Arc family DNA-binding protein | - |
| HC169_RS17250 (HC169_17225) | - | 3718508..3719281 (+) | 774 | WP_404839383.1 | phage antirepressor KilAC domain-containing protein | - |
| HC169_RS17255 (HC169_17230) | - | 3719278..3719778 (+) | 501 | WP_404839384.1 | hypothetical protein | - |
| HC169_RS17260 (HC169_17235) | - | 3719834..3720376 (-) | 543 | WP_404839385.1 | hypothetical protein | - |
| HC169_RS17265 (HC169_17240) | - | 3720633..3720881 (+) | 249 | WP_404839386.1 | hypothetical protein | - |
| HC169_RS17270 (HC169_17245) | - | 3721026..3721289 (-) | 264 | WP_404839387.1 | hypothetical protein | - |
| HC169_RS17275 (HC169_17250) | - | 3721376..3722005 (-) | 630 | WP_404839388.1 | antitermination protein | - |
| HC169_RS17280 (HC169_17255) | - | 3722005..3722358 (-) | 354 | WP_404839389.1 | DUF1064 domain-containing protein | - |
| HC169_RS17285 (HC169_17260) | - | 3722355..3723344 (-) | 990 | WP_404839390.1 | DUF968 domain-containing protein | - |
| HC169_RS17290 (HC169_17265) | - | 3723341..3723604 (-) | 264 | WP_404839391.1 | hypothetical protein | - |
| HC169_RS17295 (HC169_17270) | - | 3724251..3724610 (+) | 360 | WP_103244326.1 | helix-turn-helix domain-containing protein | - |
| HC169_RS17300 (HC169_17275) | - | 3724607..3725089 (+) | 483 | WP_404839392.1 | ImmA/IrrE family metallo-endopeptidase | - |
| HC169_RS17305 (HC169_17280) | - | 3725511..3726320 (-) | 810 | WP_404839393.1 | Bro-N domain-containing protein | - |
| HC169_RS17310 (HC169_17285) | - | 3726424..3726813 (-) | 390 | WP_404839394.1 | DUF4406 domain-containing protein | - |
| HC169_RS17315 (HC169_17290) | - | 3726803..3727108 (-) | 306 | WP_404839395.1 | hypothetical protein | - |
| HC169_RS17320 (HC169_17295) | - | 3727101..3727310 (-) | 210 | WP_404839396.1 | hypothetical protein | - |
| HC169_RS17325 (HC169_17300) | - | 3727307..3727537 (-) | 231 | WP_310011220.1 | hypothetical protein | - |
| HC169_RS17330 (HC169_17305) | - | 3727534..3727794 (-) | 261 | WP_404839397.1 | hypothetical protein | - |
| HC169_RS17335 (HC169_17310) | - | 3727794..3728207 (-) | 414 | WP_404839398.1 | hypothetical protein | - |
| HC169_RS17340 (HC169_17315) | - | 3728257..3729315 (-) | 1059 | WP_404839399.1 | conserved phage C-terminal domain-containing protein | - |
| HC169_RS17345 (HC169_17320) | - | 3729371..3729535 (-) | 165 | WP_156139742.1 | hypothetical protein | - |
| HC169_RS17350 (HC169_17325) | - | 3729603..3730049 (-) | 447 | WP_404839400.1 | phage regulatory CII family protein | - |
| HC169_RS17355 (HC169_17330) | - | 3730132..3730350 (-) | 219 | WP_033130551.1 | hypothetical protein | - |
| HC169_RS17360 (HC169_17335) | - | 3730458..3731150 (+) | 693 | WP_081966135.1 | LexA family transcriptional regulator | - |
| HC169_RS17365 (HC169_17340) | - | 3731169..3731714 (-) | 546 | WP_404839401.1 | hypothetical protein | - |
| HC169_RS17370 (HC169_17345) | - | 3733003..3733224 (+) | 222 | WP_404839402.1 | hypothetical protein | - |
| HC169_RS17375 | - | 3733262..3735106 (+) | 1845 | WP_404839403.1 | phage N-6-adenine-methyltransferase | - |
| HC169_RS17380 (HC169_17355) | - | 3735103..3735861 (+) | 759 | WP_404839404.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| HC169_RS17385 (HC169_17360) | - | 3735858..3737669 (+) | 1812 | WP_404839405.1 | DNA cytosine methyltransferase | - |
| HC169_RS17390 (HC169_17365) | - | 3737666..3738034 (+) | 369 | WP_404839406.1 | hypothetical protein | - |
| HC169_RS17395 (HC169_17370) | - | 3738031..3739734 (+) | 1704 | WP_404839407.1 | SNF2-related protein | - |
| HC169_RS17400 (HC169_17375) | - | 3739731..3740168 (+) | 438 | WP_404839408.1 | hypothetical protein | - |
| HC169_RS17405 (HC169_17380) | - | 3740144..3740338 (+) | 195 | WP_042648540.1 | hypothetical protein | - |
| HC169_RS17410 (HC169_17385) | - | 3740394..3740651 (+) | 258 | WP_404839409.1 | hypothetical protein | - |
| HC169_RS17415 (HC169_17390) | ssb | 3740651..3741115 (+) | 465 | WP_404839410.1 | single-stranded DNA-binding protein | Machinery gene |
| HC169_RS17420 (HC169_17395) | xisR | 3741182..3741391 (+) | 210 | WP_033130544.1 | excisionase family protein | - |
| HC169_RS17425 (HC169_17400) | - | 3741367..3742674 (+) | 1308 | WP_404839411.1 | Arm DNA-binding domain-containing protein | - |
| HC169_RS17430 (HC169_17405) | ettA | 3742703..3744370 (+) | 1668 | WP_404839412.1 | energy-dependent translational throttle protein EttA | - |
| HC169_RS17435 (HC169_17410) | - | 3744533..3744868 (+) | 336 | WP_404839413.1 | hypothetical protein | - |
| HC169_RS17440 (HC169_17415) | - | 3745131..3746474 (+) | 1344 | WP_404839414.1 | NCS2 family permease | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16935.96 Da Isoelectric Point: 6.7297
>NTDB_id=434736 HC169_RS17415 WP_404839410.1 3740651..3741115(+) (ssb) [Aeromonas media strain FiBL-4359]
MASRGINKVILIGNLGQDPEVRYMPGGNAVTNITLATSDTWRDKQTGEQRERTEWHRVVFMGVLAEVAGKHLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGNGGGKQQGGSSQPRQIPHPAPAPASNEPPIDYDDDLPF
MASRGINKVILIGNLGQDPEVRYMPGGNAVTNITLATSDTWRDKQTGEQRERTEWHRVVFMGVLAEVAGKHLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGNGGGKQQGGSSQPRQIPHPAPAPASNEPPIDYDDDLPF
Nucleotide
Download Length: 465 bp
>NTDB_id=434736 HC169_RS17415 WP_404839410.1 3740651..3741115(+) (ssb) [Aeromonas media strain FiBL-4359]
ATGGCCAGCCGCGGTATCAACAAGGTCATCCTGATCGGCAACCTGGGCCAGGATCCGGAAGTGCGCTACATGCCCGGCGG
AAACGCTGTCACCAACATCACCTTGGCGACCTCCGACACCTGGCGCGATAAGCAGACAGGGGAGCAGAGGGAGCGCACTG
AGTGGCACCGAGTGGTGTTTATGGGAGTGCTGGCTGAAGTGGCAGGGAAGCACCTGAAGAAGGGCTCCCAGGTCTACGTG
GAGGGAAAACTGCAGACTCGCAAATGGCAGGACCAGAGCGGACAGGAACGCTACACCACCGAGGTACTCGTAGACAGCTT
CACCGGTGTGATGCAGATGTTGGGAGGGAACGGAGGAGGGAAACAGCAGGGAGGTAGCAGCCAGCCAAGGCAAATTCCAC
ATCCGGCCCCAGCGCCGGCCAGCAACGAACCACCAATCGATTATGACGACGATCTGCCATTCTAG
ATGGCCAGCCGCGGTATCAACAAGGTCATCCTGATCGGCAACCTGGGCCAGGATCCGGAAGTGCGCTACATGCCCGGCGG
AAACGCTGTCACCAACATCACCTTGGCGACCTCCGACACCTGGCGCGATAAGCAGACAGGGGAGCAGAGGGAGCGCACTG
AGTGGCACCGAGTGGTGTTTATGGGAGTGCTGGCTGAAGTGGCAGGGAAGCACCTGAAGAAGGGCTCCCAGGTCTACGTG
GAGGGAAAACTGCAGACTCGCAAATGGCAGGACCAGAGCGGACAGGAACGCTACACCACCGAGGTACTCGTAGACAGCTT
CACCGGTGTGATGCAGATGTTGGGAGGGAACGGAGGAGGGAAACAGCAGGGAGGTAGCAGCCAGCCAAGGCAAATTCCAC
ATCCGGCCCCAGCGCCGGCCAGCAACGAACCACCAATCGATTATGACGACGATCTGCCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
61.582 |
100 |
0.708 |
| ssb | Glaesserella parasuis strain SC1401 |
51.099 |
100 |
0.604 |
| ssb | Neisseria meningitidis MC58 |
44.068 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
43.503 |
100 |
0.5 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
34.104 |
100 |
0.383 |