Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HC170_RS04325 Genome accession   NZ_CP050786
Coordinates   913278..913742 (-) Length   154 a.a.
NCBI ID   WP_042648538.1    Uniprot ID   A0AAW5RFN2
Organism   Aeromonas media strain DSM 4881     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 908278..918742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HC170_RS04305 (HC170_04280) - 909495..909830 (-) 336 WP_005329107.1 hypothetical protein -
  HC170_RS04310 (HC170_04285) ettA 910023..911690 (-) 1668 WP_005329110.1 energy-dependent translational throttle protein EttA -
  HC170_RS04315 (HC170_04290) - 911719..913026 (-) 1308 WP_048824633.1 site-specific integrase -
  HC170_RS04320 (HC170_04295) xisR 913002..913211 (-) 210 WP_033130544.1 excisionase family protein -
  HC170_RS04325 (HC170_04300) ssb 913278..913742 (-) 465 WP_042648538.1 single-stranded DNA-binding protein Machinery gene
  HC170_RS04330 (HC170_04305) - 913742..913999 (-) 258 WP_042648539.1 hypothetical protein -
  HC170_RS04335 (HC170_04310) - 914055..914249 (-) 195 WP_042648540.1 hypothetical protein -
  HC170_RS04340 (HC170_04315) - 914225..914662 (-) 438 WP_042648541.1 hypothetical protein -
  HC170_RS04345 - 914659..915270 (-) 612 WP_052833529.1 hypothetical protein -
  HC170_RS04350 (HC170_04325) - 915356..917167 (-) 1812 WP_042648542.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16965.04 Da        Isoelectric Point: 6.7297

>NTDB_id=434697 HC170_RS04325 WP_042648538.1 913278..913742(-) (ssb) [Aeromonas media strain DSM 4881]
MASRGINKVILIGNLGQDPEVRYMPGGIAVTNITLATSDTWRDKQTGEQRERTEWHRVVFMGVLAEVAGKHLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGNGGGKQQGSSSQPRQIPHPAPAPASNEPPIDYDDDLPF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=434697 HC170_RS04325 WP_042648538.1 913278..913742(-) (ssb) [Aeromonas media strain DSM 4881]
ATGGCCAGCCGCGGTATCAACAAGGTCATCCTGATCGGCAACCTGGGTCAGGATCCGGAAGTGCGCTACATGCCAGGCGG
GATCGCTGTCACCAACATCACCTTGGCGACCTCCGACACCTGGCGCGACAAGCAGACAGGGGAGCAGAGGGAGCGCACTG
AGTGGCACCGAGTGGTGTTTATGGGAGTGCTGGCTGAAGTGGCAGGGAAGCACCTGAAGAAGGGCTCTCAGGTCTACGTA
GAGGGAAAACTGCAGACTCGCAAATGGCAGGACCAGAGCGGACAGGAACGCTACACCACCGAGGTACTCGTAGACAGCTT
CACCGGTGTGATGCAGATGTTGGGAGGGAACGGAGGAGGGAAACAGCAGGGATCTAGCAGCCAGCCAAGGCAAATTCCAC
ATCCGGCCCCAGCGCCGGCCAGCAACGAACCACCAATCGATTATGACGACGATCTGCCATTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

62.712

100

0.721
  ssb Glaesserella parasuis strain SC1401

50.549

100

0.597
  ssb Neisseria meningitidis MC58

44.068

100

0.506
  ssb Neisseria gonorrhoeae MS11

43.503

100

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

33.526

100

0.377