Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IMQ59_RS02320 Genome accession   NZ_CP062811
Coordinates   495881..497005 (+) Length   374 a.a.
NCBI ID   WP_001626070.1    Uniprot ID   -
Organism   Escherichia coli strain Res13-Sevr-PER07-33     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 490881..502005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMQ59_RS02295 (IMQ59_02295) mscL 491007..491417 (-) 411 WP_000022442.1 large-conductance mechanosensitive channel protein MscL -
  IMQ59_RS02300 (IMQ59_02300) trkA 491547..492923 (-) 1377 WP_000691382.1 Trk system potassium transporter TrkA -
  IMQ59_RS02305 (IMQ59_02305) rsmB 492945..494234 (-) 1290 WP_001308089.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IMQ59_RS02310 (IMQ59_02310) fmt 494280..495227 (-) 948 WP_021574794.1 methionyl-tRNA formyltransferase -
  IMQ59_RS02315 (IMQ59_02315) def 495242..495751 (-) 510 WP_000114984.1 peptide deformylase -
  IMQ59_RS02320 (IMQ59_02320) dprA 495881..497005 (+) 1125 WP_001626070.1 DNA-protecting protein DprA Machinery gene
  IMQ59_RS02325 (IMQ59_02325) smg 496977..497450 (+) 474 WP_000460672.1 DUF494 family protein Smg -
  IMQ59_RS02330 (IMQ59_02330) yrdD 497479..498021 (+) 543 WP_001129723.1 type I DNA topoisomerase -
  IMQ59_RS02335 (IMQ59_02335) tsaC 498026..498598 (+) 573 WP_001297709.1 L-threonylcarbamoyladenylate synthase type 1 TsaC -
  IMQ59_RS02340 (IMQ59_02340) aroE 498603..499421 (+) 819 WP_001626065.1 shikimate dehydrogenase -
  IMQ59_RS02345 (IMQ59_02345) yrdB 499418..499675 (+) 258 WP_001070559.1 DUF1488 domain-containing protein -
  IMQ59_RS02350 (IMQ59_02350) yrdA 499651..500205 (-) 555 WP_001613937.1 gamma carbonic anhydrase family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 40964.81 Da        Isoelectric Point: 6.1402

>NTDB_id=434211 IMQ59_RS02320 WP_001626070.1 495881..497005(+) (dprA) [Escherichia coli strain Res13-Sevr-PER07-33]
MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGLTLRQAQRFLSFPRKSIESSLSWLEQPNHHLIPADSE
FYPPQLLATTDYPGALFVEGELHALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN
GVSIAVLGNGLNTIHPRRHARLATSLLEHGGALVSEFPLDVPPLAYNFPRRNRIISGLSNGVLVVEAALRSGSLVTARCA
LEQGREVFALPGPLGNPGSEGPHWLIKQGAILVTEPEEILENLQFGLHWLPDAPENSFYSPDQEDVALPFPELLANVGDE
VTPVDVVAERAGQPVPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=434211 IMQ59_RS02320 WP_001626070.1 495881..497005(+) (dprA) [Escherichia coli strain Res13-Sevr-PER07-33]
ATGGTCGATACAGAAATTTGGCTGCGTTTAATGAGCATCAGCAGCTTGTACGGCGATGATATGGTCCGTATCGCTCACTG
GGTGGCAAAACAGTCGCATATTGATGCGGTTGTATTGCAGCAAACAGGGCTTACATTGCGGCAGGCACAACGCTTTCTTT
CATTTCCACGAAAGAGTATCGAAAGCTCACTTTCTTGGTTGGAGCAACCCAACCATCATTTAATTCCTGCGGACAGCGAA
TTTTATCCTCCTCAACTTCTGGCGACGACAGATTACCCCGGCGCACTGTTTGTTGAAGGAGAACTGCACGCGCTGCATTC
ATTTCAGCTTGCCGTAGTGGGGAGTCGGGCGCATTCATGGTATGGCGAGCGATGGGGACGATTATTTTGCGAAACTCTGG
CGACGCGTGGAGTGACAATTACGAGTGGACTGGCGCGTGGAATCGATGGTGTGGCGCATAAAGCGGCCTTACAGGTAAAT
GGCGTCAGCATTGCTGTATTAGGGAATGGACTTAATACCATTCATCCGCGTCGCCATGCCCGACTGGCTACCAGTTTGCT
TGAACATGGTGGGGCTCTTGTCTCGGAATTTCCCCTCGATGTTCCTCCCCTTGCTTACAATTTCCCACGAAGAAATCGCA
TTATCAGTGGTCTAAGTAATGGTGTACTGGTGGTGGAAGCGGCTTTGCGCAGTGGTTCGCTGGTGACAGCACGTTGTGCG
CTTGAGCAGGGGCGCGAAGTTTTTGCCTTGCCGGGTCCATTAGGGAATCCGGGAAGCGAAGGGCCTCACTGGTTAATAAA
ACAAGGTGCGATTCTTGTGACGGAACCGGAAGAAATTCTGGAAAACTTGCAATTTGGATTGCACTGGTTGCCAGACGCCC
CTGAAAATTCATTTTATTCACCAGATCAGGAAGACGTGGCATTGCCATTTCCTGAGCTCCTGGCTAACGTAGGAGATGAG
GTAACACCTGTTGACGTCGTCGCTGAACGTGCCGGCCAACCTGTGCCAGAGGTAGTTACTCAACTACTCGAACTGGAGTT
AGCAGGATGGATCGCAGCTGTACCCGGCGGCTATGTCCGATTGAGGAGGGCATGCCATGTTCGACGTACTAATGTATTTG
TTTGA

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(312-357)

DNA recombination-mediator protein A (DNA_processg_A)

(67-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

48.238

98.663

0.476
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

48.71

82.888

0.404
  dprA Vibrio cholerae strain A1552

48.71

82.888

0.404
  dprA Glaesserella parasuis strain SC1401

44.807

90.107

0.404
  dprA Haemophilus influenzae Rd KW20

43.62

90.107

0.393
  dprA Legionella pneumophila strain ERS1305867

43.939

88.235

0.388