Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   KU884_RS18160 Genome accession   NZ_CP050695
Coordinates   3826230..3827756 (+) Length   508 a.a.
NCBI ID   WP_167783935.1    Uniprot ID   A0A6H0J073
Organism   Aquisalimonas sp. 2447     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3821230..3832756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU884_RS18140 (HC341_18065) - 3822597..3823880 (+) 1284 Protein_3597 short-chain fatty acid transporter -
  KU884_RS18145 (HC341_18070) - 3823996..3825225 (-) 1230 WP_167783933.1 ammonium transporter -
  KU884_RS18150 (HC341_18075) glnK 3825279..3825617 (-) 339 WP_167783934.1 P-II family nitrogen regulator -
  KU884_RS19320 - 3825738..3826184 (+) 447 WP_371807944.1 accessory factor UbiK family protein -
  KU884_RS18160 (HC341_18085) comM 3826230..3827756 (+) 1527 WP_167783935.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  KU884_RS18165 (HC341_18090) urtE 3827961..3828650 (-) 690 WP_167783936.1 urea ABC transporter ATP-binding subunit UrtE -
  KU884_RS18170 (HC341_18095) urtD 3828810..3829661 (-) 852 WP_167783937.1 urea ABC transporter ATP-binding protein UrtD -
  KU884_RS18175 (HC341_18100) urtC 3829658..3830776 (-) 1119 WP_371807965.1 urea ABC transporter permease subunit UrtC -
  KU884_RS18180 (HC341_18105) urtB 3830773..3832512 (-) 1740 WP_254432118.1 urea ABC transporter permease subunit UrtB -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 53411.97 Da        Isoelectric Point: 7.3261

>NTDB_id=434053 KU884_RS18160 WP_167783935.1 3826230..3827756(+) (comM) [Aquisalimonas sp. 2447]
MTLAVVYGRAGVGVDAPLVTIEVHLANGLPSMSIVGLPETAVKESRDRVRSAIVNSGFEFPTRRITINLAPADLPKEGGR
FDLPIAVGILAASGQIPRTALPVWEFAGELALSGELRPVQGCLPVAVQARHAGRNLAVPAANAPEAALVHPGHSYGVGHL
LDLSGHLAGRSELPPAQATPTEAVCSLPDLADVRGQAGARRALEIAAAGGHSLLLSGPPGTGKSMLAERLPGILPPMSDT
ESLETAAVLSLTRTGFDAGDWGRRPFRAPHHSASHVALTGGGGRPRPGEISLAHNGVLFLDELPEFGRQALEVLREPLET
GQVSISRAAAQVVFPARFQLVTAMNPCPCGYHGDPVHACRCTPDQIDRYRGRISGPLLDRIDMQVEVARLRPAELHEAPP
GEASATVRARVCQARDRRLALSGTCCAALESDAVEAGCGLGRDESRFLIQAMERLGLSARAYHRLLRVARTIADLANADR
VTVQHLGEALGYRRLTGGSSADGCSLTS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=434053 KU884_RS18160 WP_167783935.1 3826230..3827756(+) (comM) [Aquisalimonas sp. 2447]
ATGACACTTGCAGTGGTCTACGGTCGCGCGGGCGTCGGCGTCGACGCCCCGCTGGTCACCATCGAGGTGCATCTGGCCAA
CGGCCTGCCGTCGATGTCCATCGTCGGCCTGCCGGAGACGGCGGTGAAGGAAAGCCGCGACAGGGTGCGCAGCGCCATCG
TCAACAGCGGCTTCGAGTTCCCCACCCGCCGCATCACCATCAACCTCGCCCCGGCGGACCTGCCCAAGGAGGGTGGCCGC
TTCGATCTGCCTATTGCCGTGGGCATCCTCGCCGCCTCCGGCCAGATACCGCGAACAGCGCTGCCCGTGTGGGAGTTCGC
CGGGGAGCTGGCCCTGAGCGGCGAGCTGCGGCCGGTCCAGGGCTGCCTGCCGGTGGCCGTCCAGGCACGCCATGCCGGCC
GCAACCTCGCGGTCCCCGCGGCGAATGCACCGGAAGCCGCACTCGTCCACCCGGGGCACAGCTACGGCGTCGGCCACCTG
CTGGATCTGAGTGGGCACCTCGCCGGCCGCAGTGAGCTCCCTCCCGCACAAGCCACCCCGACGGAGGCCGTCTGCTCACT
GCCGGATCTGGCCGACGTGCGCGGGCAGGCCGGCGCCCGCCGCGCCCTGGAGATCGCCGCTGCCGGCGGCCACTCTTTGC
TGCTGAGCGGTCCGCCGGGCACCGGCAAGAGCATGCTCGCCGAGCGCCTGCCCGGTATCCTGCCGCCGATGTCCGATACG
GAAAGCCTGGAAACAGCGGCGGTCCTTTCGCTGACCCGCACGGGGTTCGATGCCGGTGACTGGGGGCGCCGGCCGTTCCG
GGCGCCTCACCATTCAGCCTCCCACGTGGCGCTCACGGGCGGCGGCGGGCGGCCGCGCCCCGGGGAGATCTCCCTTGCCC
ACAACGGGGTCCTCTTTCTTGATGAACTGCCGGAATTCGGCCGCCAGGCGCTGGAGGTGCTCAGGGAACCCCTGGAGACC
GGGCAGGTAAGCATCTCGCGGGCAGCGGCGCAGGTGGTGTTCCCGGCACGATTCCAGCTCGTCACCGCCATGAACCCCTG
CCCCTGCGGCTACCACGGCGACCCCGTGCACGCCTGCCGCTGCACGCCGGACCAGATCGACCGCTACCGCGGCCGCATCT
CCGGGCCGCTGCTGGACCGCATCGACATGCAGGTGGAAGTAGCTCGGCTGCGCCCGGCAGAGCTGCACGAGGCGCCTCCC
GGGGAAGCGTCAGCCACGGTGCGCGCCCGCGTCTGCCAGGCGCGGGACCGGCGGCTCGCTCTGAGCGGGACCTGCTGCGC
AGCGCTGGAGTCGGATGCCGTCGAAGCAGGCTGCGGCCTGGGTCGTGACGAGAGCCGCTTCCTGATCCAGGCCATGGAGC
GCCTGGGCCTGTCGGCCCGCGCTTACCATCGACTGCTGCGTGTGGCACGCACAATCGCCGACCTGGCGAATGCCGACCGG
GTCACCGTTCAGCACCTGGGAGAAGCGCTTGGATACCGGCGACTGACCGGCGGCAGCAGCGCTGACGGTTGTTCGTTGAC
CAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6H0J073

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.364

97.441

0.549
  comM Vibrio cholerae strain A1552

56.162

97.441

0.547
  comM Haemophilus influenzae Rd KW20

53.707

98.228

0.528
  comM Glaesserella parasuis strain SC1401

53.106

98.228

0.522
  comM Legionella pneumophila str. Paris

51.308

97.835

0.502
  comM Legionella pneumophila strain ERS1305867

51.308

97.835

0.502
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.04

99.213

0.447