Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB664_RS04905 Genome accession   NZ_CP050520
Coordinates   1028317..1028847 (+) Length   176 a.a.
NCBI ID   WP_029740211.1    Uniprot ID   A0A263VT06
Organism   Enterobacter sp. DNB-S2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1023317..1033847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB664_RS04885 (HB664_04880) aphA 1023641..1024354 (+) 714 Protein_942 acid phosphatase AphA -
  HB664_RS04890 (HB664_04885) - 1024468..1024884 (+) 417 WP_023310052.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HB664_RS04895 (HB664_04890) - 1024887..1025240 (+) 354 WP_023310053.1 MmcQ/YjbR family DNA-binding protein -
  HB664_RS04900 (HB664_04895) uvrA 1025244..1028066 (-) 2823 WP_219940423.1 excinuclease ABC subunit UvrA -
  HB664_RS04905 (HB664_04900) ssb 1028317..1028847 (+) 531 WP_029740211.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HB664_RS04910 (HB664_04905) - 1028910..1029191 (-) 282 WP_008503385.1 YjcB family protein -
  HB664_RS04915 (HB664_04910) - 1029837..1031402 (+) 1566 WP_058842042.1 EAL domain-containing protein -
  HB664_RS04920 (HB664_04915) soxS 1031409..1031735 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  HB664_RS04925 (HB664_04920) soxR 1031834..1032292 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  HB664_RS04930 (HB664_04925) - 1032649..1033320 (+) 672 WP_109846225.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18792.81 Da        Isoelectric Point: 5.2456

>NTDB_id=433588 HB664_RS04905 WP_029740211.1 1028317..1028847(+) (ssb) [Enterobacter sp. DNB-S2]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQSQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=433588 HB664_RS04905 WP_029740211.1 1028317..1028847(+) (ssb) [Enterobacter sp. DNB-S2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTAGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGGCCGGCGCTGAGAAGTACACCACAGAAGTCGTGGTCAACGTGGG
CGGTACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAGCCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCTCGTCCGCAGCAGCAGTCAGCTCCG
GCGCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A263VT06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.773
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364