Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HB764_RS15665 Genome accession   NZ_CP050478
Coordinates   3317626..3319149 (-) Length   507 a.a.
NCBI ID   WP_005535577.1    Uniprot ID   A0A812GMI9
Organism   Vibrio campbellii strain LJC011     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3312626..3324149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS15640 (HB764_15535) - 3312684..3313670 (+) 987 WP_255958203.1 serine/threonine protein kinase -
  HB764_RS15645 (HB764_15540) - 3313705..3314307 (+) 603 WP_255957285.1 thiol:disulfide interchange protein DsbA/DsbL -
  HB764_RS15650 (HB764_15545) - 3314643..3315521 (-) 879 WP_255957286.1 acyltransferase -
  HB764_RS15655 (HB764_15550) - 3315691..3316647 (+) 957 WP_255957287.1 DUF2860 domain-containing protein -
  HB764_RS15660 (HB764_15555) - 3316782..3317615 (+) 834 WP_255957288.1 GGDEF domain-containing protein -
  HB764_RS15665 (HB764_15560) comM 3317626..3319149 (-) 1524 WP_005535577.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HB764_RS15670 (HB764_15565) ilvG 3319612..3321258 (+) 1647 WP_255957290.1 acetolactate synthase 2 catalytic subunit -
  HB764_RS15675 (HB764_15570) ilvM 3321270..3321554 (+) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  HB764_RS15680 (HB764_15575) ilvE 3321567..3322505 (+) 939 WP_005429790.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54922.00 Da        Isoelectric Point: 8.8465

>NTDB_id=433228 HB764_RS15665 WP_005535577.1 3317626..3319149(-) (comM) [Vibrio campbellii strain LJC011]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRHLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=433228 HB764_RS15665 WP_005535577.1 3317626..3319149(-) (comM) [Vibrio campbellii strain LJC011]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCACCGGCGGATTTGCCCAAAGAAGGTGGGCGC
TTCGATCTGCCGATTGCATTGGGAATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCTCTTTCTGGTGGATTGAGAACGGTAAAAGGCGTGCTGCCAGCTGCGTTGGCTGCGAACAAAAAACAGC
GCCATTTAGTGGTGCCTCATGCTAATGGCGATCAGGCGGCACTTGTCGGCAAAGAGCAGCACAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCTGAGCTGTGTGGCCAACATCAACTGAACTTGTATCAAACGCCCAAGAAAAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAGCAGCAAGGAAAGCGCGCTTTAGAAATTGCGGCTGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACACAACTGGAAGACGCGGCCGTT
TCGTGCCCCGCATCATTCCAGCTCCATGGCAGCTTTAGTTGGTGGTGGATCTGTGCCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTGTTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCTGGTGAAATTATTATATCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCTAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGATTATCAG
GCCCACTTCTTGATCGCTTTGATATGTCATTAGAAATTCCTGCATTGCCGAAAGGAACCCTCTCTGAAGGTGGCGATAGA
GGGGAACCAACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGCAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGTTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTGTCGATTCGTGCTTATCACCGTATCATCAAAGTTGCGCGTACTATTGCCGATCTGGAGGGCTCACCGCAA
ATTGAGCGAACACATCTTGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812GMI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

100

100

1
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

50.201

98.225

0.493
  comM Legionella pneumophila strain ERS1305867

50.201

98.225

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438