Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB764_RS13835 Genome accession   NZ_CP050478
Coordinates   2933868..2934407 (-) Length   179 a.a.
NCBI ID   WP_010648159.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2928868..2939407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS13815 (HB764_13705) - 2929182..2929511 (-) 330 WP_255957151.1 MSHA biogenesis protein MshK -
  HB764_RS13820 (HB764_13710) gspM 2929504..2930154 (-) 651 WP_255957152.1 type II secretion system protein GspM -
  HB764_RS13825 (HB764_13715) - 2930151..2931599 (-) 1449 WP_255957153.1 MSHA biogenesis protein MshI -
  HB764_RS13830 (HB764_13720) csrD 2931611..2933620 (-) 2010 WP_255957154.1 RNase E specificity factor CsrD -
  HB764_RS13835 (HB764_13725) ssb 2933868..2934407 (-) 540 WP_010648159.1 single-stranded DNA-binding protein Machinery gene
  HB764_RS13840 (HB764_13730) qstR 2934701..2935345 (+) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB764_RS13845 (HB764_13735) galU 2935509..2936381 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB764_RS13850 (HB764_13740) uvrA 2936520..2939342 (+) 2823 WP_255957155.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9269

>NTDB_id=433218 HB764_RS13835 WP_010648159.1 2933868..2934407(-) (ssb) [Vibrio campbellii strain LJC011]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=433218 HB764_RS13835 WP_010648159.1 2933868..2934407(-) (ssb) [Vibrio campbellii strain LJC011]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAGC
AACAAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAG
CAACCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80

100

0.804
  ssb Glaesserella parasuis strain SC1401

56.25

100

0.603
  ssb Neisseria meningitidis MC58

48.066

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.995

100

0.48