Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HB764_RS13840 Genome accession   NZ_CP050478
Coordinates   2934701..2935345 (+) Length   214 a.a.
NCBI ID   WP_005432827.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC011     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2929701..2940345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB764_RS13825 (HB764_13715) - 2930151..2931599 (-) 1449 WP_255957153.1 MSHA biogenesis protein MshI -
  HB764_RS13830 (HB764_13720) csrD 2931611..2933620 (-) 2010 WP_255957154.1 RNase E specificity factor CsrD -
  HB764_RS13835 (HB764_13725) ssb 2933868..2934407 (-) 540 WP_010648159.1 single-stranded DNA-binding protein Machinery gene
  HB764_RS13840 (HB764_13730) qstR 2934701..2935345 (+) 645 WP_005432827.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB764_RS13845 (HB764_13735) galU 2935509..2936381 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB764_RS13850 (HB764_13740) uvrA 2936520..2939342 (+) 2823 WP_255957155.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24551.46 Da        Isoelectric Point: 8.0591

>NTDB_id=433219 HB764_RS13840 WP_005432827.1 2934701..2935345(+) (qstR) [Vibrio campbellii strain LJC011]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=433219 HB764_RS13840 WP_005432827.1 2934701..2935345(+) (qstR) [Vibrio campbellii strain LJC011]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAACACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCTCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCCCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACAGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATCAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

100

100

1
  qstR Vibrio parahaemolyticus RIMD 2210633

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.336

100

0.523