Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HB763_RS05105 Genome accession   NZ_CP050475
Coordinates   1090826..1092349 (+) Length   507 a.a.
NCBI ID   WP_255985512.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1085826..1097349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS05090 (HB763_05100) ilvE 1087470..1088408 (-) 939 WP_005429790.1 branched-chain-amino-acid transaminase -
  HB763_RS05095 (HB763_05105) ilvM 1088421..1088705 (-) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  HB763_RS05100 (HB763_05110) ilvG 1088717..1090363 (-) 1647 WP_045451523.1 acetolactate synthase 2 catalytic subunit -
  HB763_RS05105 (HB763_05115) comM 1090826..1092349 (+) 1524 WP_255985512.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HB763_RS05110 (HB763_05120) - 1092360..1093193 (-) 834 WP_255985513.1 GGDEF domain-containing protein -
  HB763_RS05115 (HB763_05125) - 1093328..1094284 (-) 957 WP_255985514.1 DUF2860 domain-containing protein -
  HB763_RS05120 (HB763_05130) - 1094454..1095332 (+) 879 WP_005429796.1 acyltransferase -
  HB763_RS05125 (HB763_05135) - 1095669..1096271 (-) 603 WP_255985515.1 thiol:disulfide interchange protein DsbA/DsbL -
  HB763_RS05130 (HB763_05140) - 1096306..1097292 (-) 987 WP_255985756.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54968.09 Da        Isoelectric Point: 8.6994

>NTDB_id=433159 HB763_RS05105 WP_255985512.1 1090826..1092349(+) (comM) [Vibrio campbellii strain LJC012]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRHLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHCRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=433159 HB763_RS05105 WP_255985512.1 1090826..1092349(+) (comM) [Vibrio campbellii strain LJC012]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCACCTGCGGATTTGCCCAAAGAAGGCGGGCGC
TTCGATCTGCCGATTGCATTGGGAATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
CGGTGAATTAGCTCTTTCTGGTGGATTGAGAACGGTAAAAGGCGTATTGCCCGCTGCGTTGGCTGCGAACAAAAAACAGC
GCCATTTAGTGGTGCCTCATGCTAATGGCGATCAGGCGGCACTTGTCGGCAAGGAGCAGCACAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCAGAGCTTTGTGGTCAACACCAATTGAATTTGTACCAAACGCCCAAGAAGAAAGAGCTCAAAGCACA
CTGTCGTGACTTGCAGGATATCATAGGTCAGCAGCAGGGAAAGCGCGCTTTAGAAATTGCGGCAGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACATAACTGGAAGACGCGGCCGTT
TCGTGCTCCGCATCATTCCAGCTCAATGGCGGCTCTAGTTGGTGGTGGATCTGTGCCGAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTATTTTTGGACGAGATGCCTGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCCGGTGAAATTATTATCTCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGTGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCCAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGCTTATCAG
GCCCACTTCTTGACCGCTTTGATATGTCATTAGAAATTCCTGCATTGCCGAAAGGAACCCTCTCTGAAGGTGGCGATAGA
GGGGAACCAACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGTAGTGGTAAGGTGAATGC
ATTATTGGGCAGTCGTGAAATTGAAGCCTTCTGCCCGTTGCAAAAAAGTGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTGTCGATTCGTGCTTATCACCGTATCATCAAAGTTGCGCGTACTATTGCCGATCTGGAGGGCTCACCGCAA
ATTGAGCGAACACATCTTGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

99.803

100

0.998
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

50.201

98.225

0.493
  comM Legionella pneumophila strain ERS1305867

50.201

98.225

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.478

99.803

0.434