Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB763_RS03055 Genome accession   NZ_CP050475
Coordinates   650660..651196 (-) Length   178 a.a.
NCBI ID   WP_005432828.1    Uniprot ID   A0A812GP34
Organism   Vibrio campbellii strain LJC012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 645660..656196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS03035 (HB763_03045) - 645974..646303 (-) 330 WP_005533781.1 hypothetical protein -
  HB763_RS03040 (HB763_03050) gspM 646296..646946 (-) 651 WP_255985363.1 type II secretion system protein GspM -
  HB763_RS03045 (HB763_03055) - 646943..648391 (-) 1449 WP_255985364.1 MSHA biogenesis protein MshI -
  HB763_RS03050 (HB763_03060) csrD 648403..650412 (-) 2010 WP_255985365.1 RNase E specificity factor CsrD -
  HB763_RS03055 (HB763_03065) ssb 650660..651196 (-) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  HB763_RS03060 (HB763_03070) qstR 651490..652134 (+) 645 WP_255985366.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB763_RS03065 (HB763_03075) galU 652298..653170 (+) 873 WP_061010771.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB763_RS03070 (HB763_03080) uvrA 653309..656131 (+) 2823 WP_255899083.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19774.84 Da        Isoelectric Point: 4.9269

>NTDB_id=433148 HB763_RS03055 WP_005432828.1 650660..651196(-) (ssb) [Vibrio campbellii strain LJC012]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=433148 HB763_RS03055 WP_005432828.1 650660..651196(-) (ssb) [Vibrio campbellii strain LJC012]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAGCAA
CCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812GP34

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.447

100

0.809
  ssb Glaesserella parasuis strain SC1401

56.545

100

0.607
  ssb Neisseria meningitidis MC58

48.333

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.489