Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HB763_RS03060 Genome accession   NZ_CP050475
Coordinates   651490..652134 (+) Length   214 a.a.
NCBI ID   WP_255985366.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC012     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 646490..657134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB763_RS03045 (HB763_03055) - 646943..648391 (-) 1449 WP_255985364.1 MSHA biogenesis protein MshI -
  HB763_RS03050 (HB763_03060) csrD 648403..650412 (-) 2010 WP_255985365.1 RNase E specificity factor CsrD -
  HB763_RS03055 (HB763_03065) ssb 650660..651196 (-) 537 WP_005432828.1 single-stranded DNA-binding protein Machinery gene
  HB763_RS03060 (HB763_03070) qstR 651490..652134 (+) 645 WP_255985366.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB763_RS03065 (HB763_03075) galU 652298..653170 (+) 873 WP_061010771.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB763_RS03070 (HB763_03080) uvrA 653309..656131 (+) 2823 WP_255899083.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24567.46 Da        Isoelectric Point: 8.0591

>NTDB_id=433149 HB763_RS03060 WP_255985366.1 651490..652134(+) (qstR) [Vibrio campbellii strain LJC012]
MKKSAYARKLFLISMEEDSGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEESSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=433149 HB763_RS03060 WP_255985366.1 651490..652134(+) (qstR) [Vibrio campbellii strain LJC012]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTTTAATCAGCATGGAAGAGGATTCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATAGACTTCAGTGAGCACAAAGAGTTAGTTCTATCGATAAAAAACCTTCCCCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTTTATGAAGA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATAAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.533

100

0.995
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

51.869

100

0.519