Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HB762_RS13090 Genome accession   NZ_CP050470
Coordinates   2765624..2767147 (-) Length   507 a.a.
NCBI ID   WP_005535577.1    Uniprot ID   A0A812GMI9
Organism   Vibrio campbellii strain LJC013     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2760624..2772147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB762_RS13065 (HB762_12970) - 2760949..2761935 (+) 987 WP_255901933.1 serine/threonine protein kinase -
  HB762_RS13070 (HB762_12975) - 2761970..2762572 (+) 603 WP_255898756.1 thiol:disulfide interchange protein DsbA/DsbL -
  HB762_RS13075 (HB762_12980) - 2762641..2763519 (-) 879 WP_005429796.1 acyltransferase -
  HB762_RS13080 (HB762_12985) - 2763689..2764645 (+) 957 WP_255898758.1 DUF2860 domain-containing protein -
  HB762_RS13085 (HB762_12990) - 2764780..2765613 (+) 834 WP_255898760.1 GGDEF domain-containing protein -
  HB762_RS13090 (HB762_12995) comM 2765624..2767147 (-) 1524 WP_005535577.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HB762_RS13095 (HB762_13000) ilvG 2767610..2769256 (+) 1647 WP_255898762.1 acetolactate synthase 2 catalytic subunit -
  HB762_RS13100 (HB762_13005) ilvM 2769268..2769552 (+) 285 WP_005429819.1 acetolactate synthase 2 small subunit -
  HB762_RS13105 (HB762_13010) ilvE 2769565..2770503 (+) 939 WP_005429790.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54922.00 Da        Isoelectric Point: 8.8465

>NTDB_id=433105 HB762_RS13090 WP_005535577.1 2765624..2767147(-) (comM) [Vibrio campbellii strain LJC013]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRTVKGVLPAALAANKKQRHLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKELKAHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQIVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLSEGGDR
GEPTAIVKERVNQARDCMLARSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=433105 HB762_RS13090 WP_005535577.1 2765624..2767147(-) (comM) [Vibrio campbellii strain LJC013]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGTAA
TGGGATGCCGGGCTTTACCTTGGTGGGGTTACCTGAGACCACAGTAAAAGAATCCAAAGATCGCGTACGAAGTGCGATCG
TCAATTCTAACTTTCAGTTTCCTGCAAAACGAATCACGGTCAATTTGGCCCCGGCGGATTTGCCCAAAGAAGGCGGGCGC
TTCGATCTGCCGATTGCATTGGGGATTTTAGCGGCTTCAGAGCAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCTCTTTCTGGTGGATTGAGAACGGTAAAAGGCGTGCTGCCAGCTGCGTTGGCTGCGAACAAAAAACAGC
GCCATTTAGTGGTGCCTCATGCTAATGGCGATCAGGCGGCACTTGTCGGCAAAGAGCAGCACAAATCTGCCCAATCACTA
TTGGAAGTTTGTGCTGAGCTGTGTGGCCAACATCAACTGAACTTGTATCAAACGCCCAAGAAAAAAGAGCTCAAAGCACA
CGGTCGTGACTTGCAGGATATCATTGGTCAGCAGCAAGGAAAGCGCGCTTTAGAAATTGCGGCTGCTGGCAATCACAACC
TGCTTTTCCTTGGCCCTCCAGGCACTGGCAAAACCATGTTGGCCTCTCGATTATGCGATTTGTTACCTGAGATGAGTGAT
GAAGAGGCGATGGAAACGGCTTCTGTGGCGTCACTGACTCAAAGTGAAATCAATGAACACAACTGGAAGACGCGGCCGTT
TCGTGCCCCGCACCATTCCAGCTCCATGGCGGCTTTAGTTGGTGGTGGATCTGTGCCTAGACCGGGCGAAATATCTCTAG
CTCACAACGGGTTATTGTTTTTGGACGAGATGCCGGAGTTTGATCGTAAGGTGCTCGACTCTTTACGTGAGCCATTGGAG
TCTGGTGAAATTATTATATCTCGGGCGCAAGGTAAGACGCGTTTTCCTGCTCGGTTCCAAATTGTAGGGGCGCTTAACCC
GAGTCCGACAGGGTATTACGAAGGCAACCAAGCTAGAACGAATCCGCAAGCCATCCTGCGTTACCTTGGCCGATTATCAG
GCCCACTTCTTGATCGCTTTGATATGTCATTAGAAATTCCTGCATTGCCGAAAGGAACTCTCTCTGAAGGCGGCGATAGA
GGGGAACCAACGGCTATCGTCAAAGAGCGGGTGAATCAAGCACGTGACTGTATGCTGGCTCGCAGTGGTAAGGTGAATGC
ATTATTGGGTAGTCGTGAGATTGAAGCCTTCTGCCCACTACAAAAAAGCGATGCGGAGTTTTTGGAAAATGCGCTGCATC
GCCTTGGATTGTCGATTCGTGCTTATCACCGCATCATTAAAGTTGCGCGTACTATTGCCGATTTGGAGGGCTCACCGCAA
ATTGAGCGAACACATCTTGCAGAAGCTTTGGGCTATCGAGCAATGGATAGGTTACTTAAACAGTTAACCGCGCAAGCCGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812GMI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

100

100

1
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

63.922

100

0.643
  comM Legionella pneumophila str. Paris

50.201

98.225

0.493
  comM Legionella pneumophila strain ERS1305867

50.201

98.225

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.701

100

0.438