Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB761_RS09440 Genome accession   NZ_CP050467
Coordinates   2023216..2023758 (+) Length   180 a.a.
NCBI ID   WP_255933174.1    Uniprot ID   A0AAE9MZN7
Organism   Vibrio campbellii strain LJC014     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2018216..2028758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS09425 (HB761_09410) uvrA 2018281..2021103 (-) 2823 WP_255933168.1 excinuclease ABC subunit UvrA -
  HB761_RS09430 (HB761_09415) galU 2021242..2022114 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB761_RS09435 (HB761_09420) qstR 2022278..2022922 (-) 645 WP_255933172.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB761_RS09440 (HB761_09425) ssb 2023216..2023758 (+) 543 WP_255933174.1 single-stranded DNA-binding protein Machinery gene
  HB761_RS09445 (HB761_09430) csrD 2024006..2026015 (+) 2010 WP_255933176.1 RNase E specificity factor CsrD -
  HB761_RS09450 (HB761_09435) - 2026027..2027475 (+) 1449 WP_255899088.1 MSHA biogenesis protein MshI -
  HB761_RS09455 (HB761_09440) gspM 2027472..2028122 (+) 651 WP_255899090.1 type II secretion system protein GspM -
  HB761_RS09460 (HB761_09445) - 2028115..2028444 (+) 330 WP_005533781.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20031.10 Da        Isoelectric Point: 4.9269

>NTDB_id=433061 HB761_RS09440 WP_255933174.1 2023216..2023758(+) (ssb) [Vibrio campbellii strain LJC014]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQQQAP
QQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=433061 HB761_RS09440 WP_255933174.1 2023216..2023758(+) (ssb) [Vibrio campbellii strain LJC014]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAAC
AAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGCAACAGGCTCCG
CAGCAACCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.769

100

0.817
  ssb Glaesserella parasuis strain SC1401

57.068

100

0.606
  ssb Neisseria meningitidis MC58

47.253

100

0.478
  ssb Neisseria gonorrhoeae MS11

47.253

100

0.478