Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HB761_RS09435 Genome accession   NZ_CP050467
Coordinates   2022278..2022922 (-) Length   214 a.a.
NCBI ID   WP_255933172.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC014     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2017278..2027922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS09425 (HB761_09410) uvrA 2018281..2021103 (-) 2823 WP_255933168.1 excinuclease ABC subunit UvrA -
  HB761_RS09430 (HB761_09415) galU 2021242..2022114 (-) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB761_RS09435 (HB761_09420) qstR 2022278..2022922 (-) 645 WP_255933172.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB761_RS09440 (HB761_09425) ssb 2023216..2023758 (+) 543 WP_255933174.1 single-stranded DNA-binding protein Machinery gene
  HB761_RS09445 (HB761_09430) csrD 2024006..2026015 (+) 2010 WP_255933176.1 RNase E specificity factor CsrD -
  HB761_RS09450 (HB761_09435) - 2026027..2027475 (+) 1449 WP_255899088.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24536.49 Da        Isoelectric Point: 9.2194

>NTDB_id=433060 HB761_RS09435 WP_255933172.1 2022278..2022922(-) (qstR) [Vibrio campbellii strain LJC014]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEKSSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTVRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=433060 HB761_RS09435 WP_255933172.1 2022278..2022922(-) (qstR) [Vibrio campbellii strain LJC014]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGACCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAACACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCTCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTACGAAAA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCGTTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAGTTCACTATAAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.065

100

0.991
  qstR Vibrio parahaemolyticus RIMD 2210633

88.318

100

0.883
  qstR Vibrio cholerae strain A1552

52.336

100

0.523