Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   HB761_RS09210 Genome accession   NZ_CP050467
Coordinates   1969246..1969821 (+) Length   191 a.a.
NCBI ID   WP_005432710.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC014     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1964246..1974821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS09195 (HB761_09180) oxyR 1964513..1965421 (+) 909 WP_005432705.1 DNA-binding transcriptional regulator OxyR -
  HB761_RS09200 (HB761_09185) - 1965500..1968067 (-) 2568 WP_255933101.1 penicillin-binding protein 1A -
  HB761_RS09205 (HB761_09190) pilM 1968246..1969262 (+) 1017 WP_255933102.1 type IV pilus biogenesis protein PilM Machinery gene
  HB761_RS09210 (HB761_09195) pilN 1969246..1969821 (+) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  HB761_RS09215 (HB761_09200) pilO 1969814..1970407 (+) 594 WP_005432718.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB761_RS09220 (HB761_09205) pilP 1970397..1970912 (+) 516 WP_010643498.1 pilus assembly protein PilP Machinery gene
  HB761_RS09225 (HB761_09210) pilQ 1970947..1972701 (+) 1755 WP_255940587.1 type IV pilus secretin PilQ Machinery gene
  HB761_RS09230 (HB761_09215) aroK 1972890..1973408 (+) 519 WP_010443904.1 shikimate kinase AroK -
  HB761_RS09235 (HB761_09220) aroB 1973440..1974540 (+) 1101 WP_255933103.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22194.53 Da        Isoelectric Point: 9.4267

>NTDB_id=433056 HB761_RS09210 WP_005432710.1 1969246..1969821(+) (pilN) [Vibrio campbellii strain LJC014]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHSIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=433056 HB761_RS09210 WP_005432710.1 1969246..1969821(+) (pilN) [Vibrio campbellii strain LJC014]
ATGCTGTATCACATTAATCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCAATCGCTGCTCTGGGTGTGCAATGGGGGATCGGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGGAATAAAACCACTGAGTTTATGAACCTGATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCCGCCAAGCTGCTGGATGTTGATATGCACTCCATTGTT
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAAGGAGG
TAAGCAGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

99.476

100

0.995
  pilN Vibrio cholerae strain A1552

60.452

92.67

0.56