Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   HB761_RS09220 Genome accession   NZ_CP050467
Coordinates   1970397..1970912 (+) Length   171 a.a.
NCBI ID   WP_010643498.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC014     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1965397..1975912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB761_RS09200 (HB761_09185) - 1965500..1968067 (-) 2568 WP_255933101.1 penicillin-binding protein 1A -
  HB761_RS09205 (HB761_09190) pilM 1968246..1969262 (+) 1017 WP_255933102.1 type IV pilus biogenesis protein PilM Machinery gene
  HB761_RS09210 (HB761_09195) pilN 1969246..1969821 (+) 576 WP_005432710.1 PilN domain-containing protein Machinery gene
  HB761_RS09215 (HB761_09200) pilO 1969814..1970407 (+) 594 WP_005432718.1 type 4a pilus biogenesis protein PilO Machinery gene
  HB761_RS09220 (HB761_09205) pilP 1970397..1970912 (+) 516 WP_010643498.1 pilus assembly protein PilP Machinery gene
  HB761_RS09225 (HB761_09210) pilQ 1970947..1972701 (+) 1755 WP_255940587.1 type IV pilus secretin PilQ Machinery gene
  HB761_RS09230 (HB761_09215) aroK 1972890..1973408 (+) 519 WP_010443904.1 shikimate kinase AroK -
  HB761_RS09235 (HB761_09220) aroB 1973440..1974540 (+) 1101 WP_255933103.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19196.27 Da        Isoelectric Point: 10.0349

>NTDB_id=433058 HB761_RS09220 WP_010643498.1 1970397..1970912(+) (pilP) [Vibrio campbellii strain LJC014]
MRNKSLLMVCMVSLLSGCQANDESLTDFIRGVENQARRDVAKLQPTEEYVVVSYEPEILRAPFELPKEATIATQPVARQD
CWQPPSRKRTDKLERFPLNQLRLKGVMGMGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=433058 HB761_RS09220 WP_010643498.1 1970397..1970912(+) (pilP) [Vibrio campbellii strain LJC014]
ATGCGAAATAAATCTTTGCTGATGGTTTGTATGGTGAGTCTGCTGAGTGGTTGCCAAGCCAATGATGAGTCACTAACCGA
CTTTATTCGCGGTGTAGAAAACCAAGCACGCCGTGATGTCGCCAAACTCCAGCCGACTGAAGAATATGTAGTGGTGAGTT
ACGAGCCTGAAATTTTGCGTGCCCCTTTTGAACTGCCAAAAGAGGCCACCATCGCAACTCAACCTGTTGCGAGGCAAGAC
TGTTGGCAACCGCCGTCAAGAAAGCGCACAGACAAACTGGAACGTTTCCCACTCAACCAACTTCGCCTTAAGGGGGTGAT
GGGAATGGGCAGCAGCGTCTCGGGTTTGGTTCAAGCTCCGAATGGCACAGTTTACAAAGTGAAGCCAGGTCAATACCTCG
GACGTAACAATGGCAAGGTAACCCACGTATCCCACAGCTATTTATTGATTAATGAAACCTTGCCAGACGGTTTAGGTTGT
TGGCAAAAGCGCAAAGTGAAGTTGGCGTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

100

100

1
  pilP Vibrio cholerae strain A1552

56.395

100

0.567