Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HB760_RS13635 Genome accession   NZ_CP050463
Coordinates   2905387..2905926 (-) Length   179 a.a.
NCBI ID   WP_010648159.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2900387..2910926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS13615 (HB760_13535) - 2900701..2901030 (-) 330 WP_005533781.1 hypothetical protein -
  HB760_RS13620 (HB760_13540) gspM 2901023..2901673 (-) 651 WP_255899090.1 type II secretion system protein GspM -
  HB760_RS13625 (HB760_13545) - 2901670..2903118 (-) 1449 WP_255899088.1 MSHA biogenesis protein MshI -
  HB760_RS13630 (HB760_13550) csrD 2903130..2905139 (-) 2010 WP_255899086.1 RNase E specificity factor CsrD -
  HB760_RS13635 (HB760_13555) ssb 2905387..2905926 (-) 540 WP_010648159.1 single-stranded DNA-binding protein Machinery gene
  HB760_RS13640 (HB760_13560) qstR 2906220..2906864 (+) 645 WP_255899084.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB760_RS13645 (HB760_13565) galU 2907028..2907900 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB760_RS13650 (HB760_13570) uvrA 2908038..2910860 (+) 2823 WP_255899083.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19902.97 Da        Isoelectric Point: 4.9269

>NTDB_id=433021 HB760_RS13635 WP_010648159.1 2905387..2905926(-) (ssb) [Vibrio campbellii strain LJC015]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=433021 HB760_RS13635 WP_010648159.1 2905387..2905926(-) (ssb) [Vibrio campbellii strain LJC015]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGCTGTTTGGCAAACTTGCTGAAGTAGCAGGCGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGCCAAGACCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCACCAATGGGTGGTGGTCAGCCTCAACAGCAGCAGC
AACAAGGTGGTTGGGGTCAACCTCAACAACCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAGCAACAGGCTCCGCAG
CAACCTCAGCAGCAATACAACGAGCCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80

100

0.804
  ssb Glaesserella parasuis strain SC1401

56.25

100

0.603
  ssb Neisseria meningitidis MC58

48.066

100

0.486
  ssb Neisseria gonorrhoeae MS11

46.995

100

0.48