Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   HB760_RS13640 Genome accession   NZ_CP050463
Coordinates   2906220..2906864 (+) Length   214 a.a.
NCBI ID   WP_255899084.1    Uniprot ID   -
Organism   Vibrio campbellii strain LJC015     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901220..2911864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB760_RS13625 (HB760_13545) - 2901670..2903118 (-) 1449 WP_255899088.1 MSHA biogenesis protein MshI -
  HB760_RS13630 (HB760_13550) csrD 2903130..2905139 (-) 2010 WP_255899086.1 RNase E specificity factor CsrD -
  HB760_RS13635 (HB760_13555) ssb 2905387..2905926 (-) 540 WP_010648159.1 single-stranded DNA-binding protein Machinery gene
  HB760_RS13640 (HB760_13560) qstR 2906220..2906864 (+) 645 WP_255899084.1 LuxR C-terminal-related transcriptional regulator Regulator
  HB760_RS13645 (HB760_13565) galU 2907028..2907900 (+) 873 WP_005432802.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  HB760_RS13650 (HB760_13570) uvrA 2908038..2910860 (+) 2823 WP_255899083.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24546.53 Da        Isoelectric Point: 9.2194

>NTDB_id=433022 HB760_RS13640 WP_255899084.1 2906220..2906864(+) (qstR) [Vibrio campbellii strain LJC015]
MKKSAYARKLFLISMEEDAGKKVEALEKYTDIDIPVISPQALMEANPKHRNKILLIDFSEHKELVLSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGIFYEKSSLEQIGEGLKEIINGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=433022 HB760_RS13640 WP_255899084.1 2906220..2906864(+) (qstR) [Vibrio campbellii strain LJC015]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTAATCAGCATGGAAGAGGATGCAGGGAAAAAGGTCGAAGCTCTGGA
GAAGTATACAGATATCGACATCCCCGTCATTTCGCCCCAAGCACTGATGGAAGCAAACCCGAAGCACCGCAATAAAATCT
TGCTTATCGACTTCAGTGAACACAAAGAGTTGGTTCTATCGATAAAAAACCTTCCTCTGATTTGGAAGAATTTCGAAACA
GTCGTGTTCAACGTTCCTAAACGTTTGACGACAGATGAGCTATTGGCGTTTGGTCAATTGAAAGGCATCTTCTACGAAAA
GAGTTCTCTTGAGCAGATTGGCGAAGGGTTAAAGGAAATCATTAATGGTCAAAACTGGCTGCCTCGTAATGTCACCAGTC
AACTTCTCCATTATTATCGTAACGTCATTAGTACCCACACCGCTCCTGCCACCGTCGATTTGACCATTCGTGAACTGCAA
GTACTTCGCTGCCTGCAAGCTGGCGCATCAAACAATCAAATGGCCGAAGAGTTATTCGTGAGCGAATTCACTATAAAGTC
TCACCTGTATCAGATTTTTAAGAAGCTTTCGGTCAAAAACCGTGTACAAGCGATTGCTTGGGCTGACCAAAACCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

99.065

100

0.991
  qstR Vibrio parahaemolyticus RIMD 2210633

88.318

100

0.883
  qstR Vibrio cholerae strain A1552

52.804

100

0.528