Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SSUST1_RS00830 Genome accession   NC_017950
Coordinates   133130..133537 (+) Length   135 a.a.
NCBI ID   WP_014735291.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128130..138537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS00805 (SSUST1_0136) - 129530..129895 (+) 366 WP_014735287.1 DUF1033 family protein -
  SSUST1_RS00810 (SSUST1_0137) - 129930..130880 (-) 951 WP_014735288.1 S66 peptidase family protein -
  SSUST1_RS00815 (SSUST1_0138) comGA 130966..131917 (+) 952 Protein_123 competence type IV pilus ATPase ComGA -
  SSUST1_RS00820 (SSUST1_0140) comGB 131829..132866 (+) 1038 WP_268739958.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSUST1_RS00825 (SSUST1_0141) comGC 132868..133149 (+) 282 WP_014735290.1 competence type IV pilus major pilin ComGC Machinery gene
  SSUST1_RS00830 (SSUST1_0142) comGD 133130..133537 (+) 408 WP_014735291.1 competence type IV pilus minor pilin ComGD Machinery gene
  SSUST1_RS00835 (SSUST1_0143) comGE 133509..133802 (+) 294 WP_024405248.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSUST1_RS00840 (SSUST1_0144) comGF/cglF 133789..134223 (+) 435 WP_014735293.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSUST1_RS00845 (SSUST1_0145) comGG 134201..134722 (+) 522 WP_014735294.1 competence type IV pilus minor pilin ComGG -
  SSUST1_RS00850 (SSUST1_0146) comGH 134779..135732 (+) 954 WP_014735295.1 class I SAM-dependent methyltransferase Machinery gene
  SSUST1_RS00855 (SSUST1_0147) - 135782..136969 (+) 1188 WP_012775422.1 acetate kinase -
  SSUST1_RS00860 (SSUST1_0148) - 137284..137835 (+) 552 WP_012774908.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15300.52 Da        Isoelectric Point: 9.7340

>NTDB_id=43193 SSUST1_RS00830 WP_014735291.1 133130..133537(+) (comGD) [Streptococcus suis ST1]
MLRRKNKAFTLFESLLTLLVVSFLAVSLSGTVQTVFQSVQEEIFLWEFEAVYKDSQKLAASSHQSVSLTIGEQEVTNGHQ
MVKVPRSVEVLEGKTITFEENGGNSSLTKIRFRLSRKTVTYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=43193 SSUST1_RS00830 WP_014735291.1 133130..133537(+) (comGD) [Streptococcus suis ST1]
ATGCTACGGCGAAAAAATAAGGCCTTCACCCTGTTTGAAAGTCTGCTGACCTTGTTGGTTGTCAGTTTTTTAGCTGTTTC
CTTATCAGGAACAGTACAAACGGTCTTTCAGTCTGTTCAGGAAGAAATTTTTCTCTGGGAATTTGAAGCCGTTTACAAAG
ACAGTCAGAAATTGGCTGCTAGTTCTCACCAGTCAGTTAGCCTGACTATCGGCGAACAAGAAGTGACAAATGGTCATCAG
ATGGTGAAAGTACCTAGAAGTGTAGAAGTATTAGAAGGGAAGACCATCACATTTGAAGAAAATGGAGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCGAAAGACAGTCACATATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

48.062

95.556

0.459
  comGD Streptococcus mutans UA159

48.062

95.556

0.459
  comGD/cglD Streptococcus pneumoniae D39

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae R6

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae Rx1

46.512

95.556

0.444
  comGD/cglD Streptococcus pneumoniae TIGR4

46.512

95.556

0.444
  comGD Streptococcus gordonii str. Challis substr. CH1

46.457

94.074

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis SK321

45.736

95.556

0.437
  comGD Lactococcus lactis subsp. cremoris KW2

39.062

94.815

0.37

Multiple sequence alignment