Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SSUST1_RS00365 Genome accession   NC_017950
Coordinates   62902..63801 (+) Length   299 a.a.
NCBI ID   WP_014735243.1    Uniprot ID   -
Organism   Streptococcus suis ST1     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 57902..68801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUST1_RS00345 (SSUST1_0056) tnpA 58129..58642 (+) 514 Protein_48 IS200/IS605 family transposase -
  SSUST1_RS00350 (SSUST1_0057) - 58780..60381 (+) 1602 WP_014735239.1 ABC transporter ATP-binding protein -
  SSUST1_RS11140 (SSUST1_0058) - 60483..60656 (+) 174 WP_014735240.1 hypothetical protein -
  SSUST1_RS00355 (SSUST1_0059) ruvB 60951..61952 (+) 1002 WP_014735241.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SSUST1_RS00360 (SSUST1_0060) - 62020..62655 (+) 636 WP_014735242.1 HAD-IA family hydrolase -
  SSUST1_RS00365 (SSUST1_0061) comR 62902..63801 (+) 900 WP_014735243.1 helix-turn-helix domain-containing protein Regulator
  SSUST1_RS00370 - 64227..65429 (+) 1203 Protein_54 IS110 family transposase -
  SSUST1_RS00375 (SSUST1_0065) - 65984..66921 (-) 938 Protein_55 IS4 family transposase -
  SSUST1_RS00380 (SSUST1_0066) - 67058..68278 (+) 1221 WP_014735248.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35453.36 Da        Isoelectric Point: 4.6492

>NTDB_id=43182 SSUST1_RS00365 WP_014735243.1 62902..63801(+) (comR) [Streptococcus suis ST1]
MNDKEFGQRVRQLRESASMTREQFCDDELELSVRQLTRIEAGTSKPTFSKIQYIATRLGMGLYELMPDYVSLPERYSKLK
FDVLRTPTYGNEDLAEKRDAMMTEIYDDYYDELPEEEKIAIDAIQSRIDTLESGTAGFGKEILEDYFEQIFRKRKYELND
LLIVRLHLEYVRLSSCDSEIFRQFLKIIEHLHEQMNIINSNDLFVLRDTLLSCVNILGSKKYYEPIPKIFDSVDKIIQST
QDFQKKPIVSVLKWKYALFVDKDRDEAEKHYLDAVLFAKLIENRELEQKIEEDWRVDNQ

Nucleotide


Download         Length: 900 bp        

>NTDB_id=43182 SSUST1_RS00365 WP_014735243.1 62902..63801(+) (comR) [Streptococcus suis ST1]
ATGAACGATAAGGAATTTGGACAGCGTGTACGTCAATTACGAGAATCTGCTAGTATGACACGTGAACAGTTTTGTGACGA
TGAACTGGAACTCTCTGTGCGCCAATTAACTCGTATTGAAGCAGGTACTTCCAAGCCGACTTTTTCAAAGATTCAGTATA
TTGCAACTCGTTTAGGTATGGGACTTTACGAGCTTATGCCAGATTACGTATCCTTACCCGAAAGATATTCCAAGCTGAAG
TTTGATGTGCTTCGCACCCCAACTTATGGTAATGAAGATTTGGCGGAAAAGCGAGATGCCATGATGACAGAAATCTATGA
CGATTATTATGATGAATTGCCTGAGGAGGAGAAGATAGCAATAGATGCGATTCAATCACGAATTGATACTTTAGAGTCAG
GTACAGCAGGCTTTGGAAAAGAGATACTGGAAGACTACTTTGAACAAATTTTTCGCAAACGAAAGTATGAATTGAATGAT
TTGTTGATTGTTAGGCTCCATCTTGAATATGTTAGGTTATCTAGCTGTGATTCAGAAATATTTAGACAGTTTTTGAAAAT
TATAGAGCATTTACATGAGCAAATGAATATCATCAACTCAAATGATTTATTTGTTCTAAGGGATACATTATTATCCTGTG
TAAACATTTTGGGAAGTAAAAAATATTACGAACCAATACCAAAGATATTTGATAGTGTAGATAAGATTATACAGTCGACA
CAAGATTTTCAGAAAAAGCCCATTGTTAGTGTATTAAAATGGAAATATGCACTTTTTGTGGATAAGGATCGGGATGAGGC
TGAAAAGCATTATCTAGATGCGGTGCTATTTGCAAAATTGATAGAAAATAGAGAGTTAGAACAAAAGATTGAAGAAGATT
GGAGAGTTGACAATCAATAA

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_31)

(5-60)

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

99.331

100

0.993
  comR Streptococcus suis 05ZYH33

99.331

100

0.993
  comR Streptococcus suis D9

61.462

100

0.619
  comR Streptococcus mutans UA159

43.813

100

0.438
  comR Streptococcus pyogenes MGAS315

37.374

99.331

0.371

Multiple sequence alignment