Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   VFU_RS16720 Genome accession   NC_016628
Coordinates   265131..267182 (-) Length   683 a.a.
NCBI ID   WP_014257353.1    Uniprot ID   -
Organism   Vibrio furnissii NCTC 11218     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 260131..272182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VFU_RS16705 (vfu_B00267) clcA 261070..262467 (+) 1398 WP_014257351.1 H(+)/Cl(-) exchange transporter ClcA -
  VFU_RS16710 (vfu_B00268) - 262628..263587 (+) 960 WP_004728184.1 TDT family transporter -
  VFU_RS16715 (vfu_B00269) cqsA 263805..264986 (+) 1182 WP_014257352.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  VFU_RS16720 (vfu_B00270) cqsS 265131..267182 (-) 2052 WP_014257353.1 hybrid sensor histidine kinase/response regulator Regulator
  VFU_RS16725 (vfu_B00271) - 267322..270363 (-) 3042 WP_014257354.1 AAA family ATPase -
  VFU_RS16730 (vfu_B00272) - 270367..271509 (-) 1143 WP_014257355.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 683 a.a.        Molecular weight: 78696.47 Da        Isoelectric Point: 6.0597

>NTDB_id=43181 VFU_RS16720 WP_014257353.1 265131..267182(-) (cqsS) [Vibrio furnissii NCTC 11218]
MEVVKKIYQYAEPNLTLVGWMGFIGFPFYYYVWAHVFPQPYESLLLRGFCSCLFGGIVFRNAVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLAQAALSVAAAYGAVYWLQHYEPQHVILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQPANPTQGAYIDGQDLTLLHEILGNADE
VIHTGNETIDLLLTSIDENRVSTSTFKRLSAKEVVDHALHSFSYKRALDRQAVTLNAINDFDYFGSETLLKFALYNLLKN
AFYYQNSEHFHIEVTLITRGQENLIIVRDNGVGIAPDRLDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIRCASVLG
EWTEFTLSFPQYHSERVSHIKLDLMKNKSVLYVGTQGLMSRHLSEKAFYQGFRLHHATLSEALTREEYEFEYDIILLDLE
QIGDQWQSLVELETKLHFTEAKIVYLYDKQRAYPINIERHLRVVPLEIRQLLLDTDKELDQLLFEVDDVAPDHNVVPIKQ
PKYERRILVVDDNQSLRTFTALLLEKQGYEVVQANDGQQALDAIEHNEFDLILMDIEMPIIDGIEATRVIRDSNKPYCHI
PIVGHTGDNSPLTIEKIHQSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2052 bp        

>NTDB_id=43181 VFU_RS16720 WP_014257353.1 265131..267182(-) (cqsS) [Vibrio furnissii NCTC 11218]
ATGGAAGTTGTAAAGAAAATATACCAATATGCTGAACCGAACCTCACGTTAGTGGGGTGGATGGGGTTTATTGGTTTTCC
GTTTTACTACTATGTGTGGGCGCATGTGTTTCCGCAGCCCTATGAATCGCTGCTGCTGCGCGGTTTCTGTTCGTGCCTGT
TTGGCGGCATTGTGTTTCGAAACGCAGTGCCGAAGTTGTGGCAGCGCTACTTACCTTACTATTACCTGTTTATGATCGGC
TTCTGTTTGCCGTTCTTCTTTGCCTATATGATGTTGATGAACGATTGGTCCACGGTGTGGGCTATGTCATTCATGGCGTC
CATCTTCCTACATATTCTGCTGGTTCATGAGACCAAAGTGATGCTGGCGCAAGCTGCGTTATCCGTCGCGGCGGCGTATG
GCGCCGTGTATTGGTTGCAACATTACGAACCACAGCATGTCATTTTGTGGCCTTATGTGCCGATTTTCCTGTTCACATAC
GTGTTCGGGAATCTGTTTTATTTCAGAAACCAAAGCTCGCATGAGTCGAAGGTGTCGATCGCGAAATCCTTTGGCGCCGG
GATTGCACATGAAATGCGCAACCCGCTCAGTGCGTTGAAATCGTCGGTTGATGTGCTGCGTTCGATTTTGCCCGCACAGC
CGGCCAATCCAACCCAAGGTGCATACATCGACGGACAGGATCTGACTTTGCTGCATGAAATTTTGGGCAACGCTGACGAA
GTGATCCACACCGGGAACGAAACCATCGACCTGTTACTCACGTCTATCGATGAAAACCGCGTCTCGACCTCAACATTCAA
GCGTTTGTCGGCCAAAGAGGTGGTTGACCACGCCCTGCATTCCTTCTCGTATAAACGCGCGTTGGATCGTCAGGCCGTCA
CACTCAACGCCATCAACGATTTTGATTATTTCGGCAGTGAAACCCTGCTGAAATTTGCCCTCTACAACTTATTGAAAAAT
GCCTTTTACTATCAGAACAGTGAACATTTTCATATAGAAGTGACGCTCATCACTCGGGGCCAAGAAAACCTCATCATCGT
GCGAGACAACGGCGTGGGCATCGCCCCCGATCGCTTGGATGACATTTTTAAGGACTTCTATACCTTTGGCAAAAATGGCA
GTTACGGTTTGGGTTTGCCGTTTTGTCGCAAGGTGATGAAGTCGTTCGGTGGCAACATCCGTTGTGCCTCCGTGCTGGGG
GAATGGACGGAGTTCACGTTAAGTTTTCCTCAATATCACTCTGAACGGGTCTCGCACATCAAACTGGATTTAATGAAAAA
TAAATCGGTGTTGTATGTTGGTACGCAAGGGCTGATGAGCCGACATCTGAGCGAGAAAGCGTTTTACCAAGGATTTCGCC
TACATCACGCAACGCTGAGCGAGGCGTTAACACGTGAAGAATACGAGTTTGAATACGACATTATTCTGCTGGATTTAGAG
CAGATCGGCGATCAGTGGCAGTCATTGGTCGAGCTGGAAACCAAGCTGCATTTTACCGAAGCCAAAATTGTTTACCTTTA
CGACAAGCAACGCGCATACCCCATCAATATTGAGCGCCATTTGCGGGTCGTACCTTTAGAAATTCGTCAACTGCTGCTCG
ATACCGACAAAGAACTCGATCAACTGCTGTTTGAGGTGGATGACGTTGCACCGGATCACAATGTTGTGCCGATCAAACAA
CCGAAATATGAACGCCGTATTCTGGTGGTAGATGACAACCAATCCTTGCGCACATTCACGGCGTTGCTACTTGAAAAGCA
GGGCTATGAAGTGGTGCAGGCCAATGATGGTCAACAGGCGTTGGATGCAATAGAGCACAACGAGTTCGACCTGATTTTGA
TGGACATTGAAATGCCGATCATTGATGGCATTGAAGCGACGCGCGTGATTCGGGATTCCAATAAGCCGTACTGCCATATT
CCGATTGTTGGCCATACCGGGGATAATAGCCCGCTGACAATTGAGAAAATTCACCAATCTGGCATGAACGATTACATCGT
TAAACCGGCCGATAAAGACAAGCTTCTGGGCAAACTGGCCAATTGGATCTAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(307-411)

Response regulator receiver domain (Response_reg)

(567-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

58.918

100

0.59

Multiple sequence alignment