Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   HB750_RS09170 Genome accession   NZ_CP050273
Coordinates   1882957..1883535 (-) Length   192 a.a.
NCBI ID   WP_019804608.1    Uniprot ID   -
Organism   Streptococcus mutans strain P1     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1877957..1888535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB750_RS09160 (HB750_09160) - 1878393..1882118 (-) 3726 WP_019804609.1 phosphoribosylformylglycinamidine synthase -
  HB750_RS09165 (HB750_09165) purC 1882128..1882835 (-) 708 WP_002269789.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  HB750_RS09170 (HB750_09170) comA 1882957..1883535 (-) 579 WP_019804608.1 ATP-binding cassette domain-containing protein Regulator
  HB750_RS09175 (HB750_09175) - 1883763..1884011 (-) 249 WP_019804607.1 acyl carrier protein -
  HB750_RS09180 (HB750_09180) plsX 1884013..1885011 (-) 999 WP_002269788.1 phosphate acyltransferase PlsX -
  HB750_RS09185 (HB750_09185) recO 1885219..1885974 (-) 756 WP_002269787.1 DNA repair protein RecO -
  HB750_RS09190 (HB750_09190) - 1885964..1887139 (-) 1176 WP_002264118.1 pyridoxal phosphate-dependent aminotransferase -
  HB750_RS09195 (HB750_09195) - 1887228..1888196 (-) 969 WP_002263139.1 ribose-phosphate diphosphokinase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 21287.26 Da        Isoelectric Point: 4.8856

>NTDB_id=431291 HB750_RS09170 WP_019804608.1 1882957..1883535(-) (comA) [Streptococcus mutans strain P1]
MGKSGSGKTTLAKILAGYYTVSSGDSFLDGEKINYSQLRQLVTYVPQQSYVFTGTILDNLLLGAEEEVTDDRLMEVCSIA
EILDDIKAMPLGFQTQISEDGGLSGGQKQRLAIARALLTRQPVLIFDEATSGLDRDTEEKVIANLSKLNRTIIFIAHRSV
SYYADRIVEIDSGEKIKDRINHRPFSFLMTTL

Nucleotide


Download         Length: 579 bp        

>NTDB_id=431291 HB750_RS09170 WP_019804608.1 1882957..1883535(-) (comA) [Streptococcus mutans strain P1]
ATGGGGAAAAGTGGTTCTGGAAAGACAACTTTGGCAAAAATTCTTGCAGGCTATTATACTGTTAGTAGCGGTGACTCTTT
CTTAGATGGAGAAAAGATAAATTATTCCCAGCTGCGCCAATTAGTAACTTATGTGCCACAGCAGTCTTATGTTTTTACAG
GAACAATCTTAGATAATCTACTTCTTGGTGCTGAAGAGGAAGTAACGGATGATCGCTTAATGGAAGTTTGTTCAATTGCT
GAAATTTTAGACGATATCAAGGCAATGCCTTTAGGTTTTCAAACACAGATTTCAGAAGACGGCGGTTTATCTGGTGGTCA
AAAACAGCGTTTAGCTATTGCACGTGCTCTCTTAACCAGACAGCCTGTGTTGATTTTTGATGAGGCAACTAGTGGTTTAG
ATCGTGATACCGAAGAAAAAGTTATTGCCAATTTATCTAAATTGAATCGCACGATTATTTTTATTGCTCACCGCAGTGTT
TCTTATTATGCTGATCGAATTGTTGAGATTGACTCTGGAGAGAAAATTAAGGACAGAATAAATCATCGTCCTTTCTCATT
TTTGATGACGACTCTTTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(1-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

51.337

97.396

0.5
  comA Streptococcus gordonii str. Challis substr. CH1

51.648

94.792

0.49
  comA/nlmT Streptococcus mutans UA159

49.468

97.917

0.484
  comA Streptococcus pneumoniae D39

49.727

95.313

0.474
  comA Streptococcus pneumoniae Rx1

49.727

95.313

0.474
  comA Streptococcus pneumoniae R6

49.727

95.313

0.474
  comA Streptococcus mitis SK321

48.634

95.313

0.464
  comA Streptococcus pneumoniae TIGR4

48.634

95.313

0.464