Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   HB753_RS08080 Genome accession   NZ_CP050270
Coordinates   1653362..1655644 (-) Length   760 a.a.
NCBI ID   WP_002266017.1    Uniprot ID   A0AAX1K0V4
Organism   Streptococcus mutans strain S4     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context


Location: 1648362..1660644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HB753_RS08065 (HB753_08065) ulaG 1648751..1649842 (-) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  HB753_RS08070 (HB753_08070) - 1650422..1652089 (-) 1668 WP_002263525.1 BglG family transcription antiterminator -
  HB753_RS08075 (HB753_08075) comB/nlmE 1652446..1653348 (-) 903 WP_167311854.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  HB753_RS08080 (HB753_08080) comA/nlmT 1653362..1655644 (-) 2283 WP_002266017.1 peptide cleavage/export ABC transporter Regulator
  HB753_RS08085 (HB753_08085) - 1656908..1657186 (-) 279 WP_002264456.1 hypothetical protein -
  HB753_RS08090 (HB753_08090) - 1657424..1657633 (-) 210 WP_002263944.1 hypothetical protein -
  HB753_RS08095 (HB753_08095) - 1658118..1658279 (-) 162 WP_162470319.1 hypothetical protein -
  HB753_RS08100 (HB753_08100) - 1658546..1658953 (-) 408 WP_002270936.1 hypothetical protein -
  HB753_RS08105 (HB753_08105) - 1658972..1659190 (-) 219 WP_002309575.1 Blp family class II bacteriocin -
  HB753_RS08110 (HB753_08110) - 1659471..1659746 (-) 276 WP_167311806.1 hypothetical protein -

Sequence


Protein


Download         Length: 760 a.a.        Molecular weight: 85082.76 Da        Isoelectric Point: 8.9095

>NTDB_id=431072 HB753_RS08080 WP_002266017.1 1653362..1655644(-) (comA/nlmT) [Streptococcus mutans strain S4]
MKQVIYVVLIVIAVNILLEVIKRVTKRGGTVSSSNPLPDGQSKLFWRRHYKLVPQIDTRDCGPAVLASVAKHYGSNYSIA
YLRELSKTNKQGTTALGIVEAAKKLGFETRSIKADMTLFDYNDLTYPFIVHVIKGKRLQHYYVVYGSQNNQLIIGDPDPS
VKVTRMSKERFQSEWTGLAIFLAPQPNYKPHKGEKNGLSNFFPLIFKQKALMTYIIIASLIVTLIDIVGSYYLQGILDEY
IPDQLISTLGMITIGLIITYIIQQVMAFAKEYLLAVLSLRLVIDVILSYIKHIFTLPMSFFATRRTGEITSRFTDANQII
DAVASTIFSIFLDMTMVILVGGVLLAQNNNLFFLTLLSIPIYAIIIFAFLKPFEKMNHEVMESNAVVSSSIIEDINGMET
IKSLTSESARYQNIDSEFVDYLEKNFKLHKYSAIQTALKSGAKLILNVVILWYGSRLVMDNKISVGQLITFNALLSYFSN
PIENIINLQSKLQSARVANTRLNEVYLVESEFEKDGDLSENSFLDGDISFENLSYKYGFGRDTLSDINLSIKKGSKVSLV
GASGSGKTTLAKLIVNFYEPNKGIVRINGNDLKVIDKTALRRHISYLPQQAYVFSGSIMDNLVLGAKEGTSQEDIIRACE
IAEIRSDIEQMPQGYQTELSDGAGISGGQKQRIALARALLTQAPVLILDEATSSLDILTEKKIISNLLQMTEKTIIFVAH
RLSISQRTDEVIVMDQGKIVEQGTHKELLAKQGFYYNLFN

Nucleotide


Download         Length: 2283 bp        

>NTDB_id=431072 HB753_RS08080 WP_002266017.1 1653362..1655644(-) (comA/nlmT) [Streptococcus mutans strain S4]
ATGAAACAAGTTATTTATGTTGTTTTAATCGTCATAGCCGTTAACATTCTCTTAGAGGTTATCAAAAGAGTAACAAAAAG
GGGAGGGACAGTTTCGTCATCTAATCCTTTACCAGATGGGCAGTCTAAGTTGTTTTGGCGCAGACATTATAAGCTAGTAC
CTCAGATTGATACCAGAGACTGTGGGCCGGCAGTGCTGGCATCTGTTGCAAAGCATTACGGATCTAACTACTCTATCGCT
TATCTGCGGGAACTCTCAAAGACTAACAAGCAGGGAACAACAGCTCTTGGCATTGTTGAAGCTGCTAAAAAGTTAGGCTT
TGAAACACGCTCTATCAAGGCGGATATGACGCTTTTTGATTATAATGATTTGACCTATCCTTTTATCGTCCATGTGATTA
AAGGAAAACGTCTGCAGCATTATTATGTCGTCTATGGCAGCCAGAATAATCAGCTGATTATTGGAGATCCTGATCCTTCA
GTTAAGGTGACTAGGATGAGTAAGGAACGCTTTCAATCAGAGTGGACAGGCCTTGCAATTTTCCTAGCTCCTCAGCCTAA
CTATAAGCCTCATAAAGGTGAAAAAAATGGTTTGTCTAATTTCTTCCCGTTGATCTTTAAGCAGAAAGCTTTGATGACTT
ATATTATCATAGCTAGCTTGATTGTGACGCTCATTGATATTGTCGGATCATACTATCTCCAAGGAATATTGGACGAGTAC
ATTCCTGATCAGCTGATTTCAACTTTAGGAATGATTACGATTGGTCTGATAATAACCTATATTATCCAGCAGGTCATGGC
TTTTGCAAAAGAATACCTCTTGGCCGTACTCAGTTTGCGTTTAGTCATTGATGTTATCCTGTCTTATATCAAACATATTT
TTACGCTTCCTATGTCTTTCTTTGCGACAAGGCGAACAGGAGAAATCACGTCTCGTTTTACAGATGCCAATCAGATTATT
GATGCTGTAGCGTCAACCATCTTTTCAATCTTTTTAGATATGACTATGGTAATTCTGGTTGGCGGAGTTTTATTGGCGCA
AAACAATAACCTTTTCTTTCTAACCTTGCTCTCTATTCCGATTTATGCCATCATTATTTTTGCTTTCTTAAAGCCTTTTG
AGAAAATGAATCACGAAGTGATGGAAAGCAATGCTGTGGTAAGTTCTTCTATCATTGAAGATATCAATGGGATGGAAACC
ATTAAATCACTCACAAGTGAGTCCGCTCGTTATCAAAACATTGATAGTGAATTTGTTGATTATTTGGAGAAAAACTTTAA
GCTACACAAGTATAGTGCCATTCAAACCGCATTAAAAAGCGGTGCTAAGCTTATCCTCAATGTTGTCATTCTCTGGTATG
GCTCTCGTCTAGTTATGGATAATAAAATCTCAGTTGGTCAGCTTATCACCTTTAATGCTTTGCTGTCTTATTTCTCAAAT
CCAATTGAAAATATTATCAATCTGCAATCCAAACTGCAGTCAGCTCGCGTTGCCAATACACGTCTTAATGAGGTCTATCT
TGTCGAATCTGAATTTGAAAAAGACGGCGATTTATCAGAAAATAGCTTTTTAGATGGTGATATTTCGTTTGAAAATCTTT
CTTATAAATATGGATTTGGGCGAGATACCTTATCAGATATTAATTTATCAATCAAAAAAGGCTCCAAGGTCAGTCTAGTT
GGAGCCAGTGGTTCTGGTAAAACAACTTTGGCTAAACTGATTGTCAATTTCTACGAGCCTAACAAGGGGATTGTTCGAAT
CAATGGCAATGATTTAAAAGTTATTGATAAGACAGCTTTGCGGCGGCATATTAGCTATTTGCCGCAACAGGCCTATGTTT
TTAGTGGCTCTATTATGGATAATCTCGTTTTAGGAGCTAAAGAAGGAACGAGTCAGGAAGACATTATTCGTGCTTGTGAA
ATTGCTGAAATCCGCTCGGACATTGAACAAATGCCTCAGGGCTATCAGACAGAGTTATCAGATGGTGCCGGTATTTCTGG
CGGTCAAAAACAGCGGATTGCTTTAGCTAGGGCCTTATTAACACAGGCACCGGTTTTGATTCTGGATGAAGCCACCAGCA
GTCTTGATATTTTGACAGAAAAGAAAATTATCAGCAATCTCTTACAGATGACGGAGAAAACAATAATTTTTGTTGCCCAC
CGCTTAAGCATTTCACAGCGTACTGACGAAGTCATTGTCATGGATCAGGGAAAAATTGTTGAACAAGGCACTCATAAGGA
ACTTTTAGCTAAGCAAGGTTTCTATTATAACCTGTTTAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

99.868

100

0.999

  comA Streptococcus mitis NCTC 12261

65.411

94.342

0.617

  comA Streptococcus pneumoniae Rx1

64.854

94.342

0.612

  comA Streptococcus pneumoniae D39

64.854

94.342

0.612

  comA Streptococcus pneumoniae R6

64.854

94.342

0.612

  comA Streptococcus mitis SK321

64.714

94.342

0.611

  comA Streptococcus pneumoniae TIGR4

64.575

94.342

0.609

  comA Streptococcus gordonii str. Challis substr. CH1

64.435

94.342

0.608