Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VEJY3_RS14040 Genome accession   NC_016613
Coordinates   3100018..3100557 (-) Length   179 a.a.
NCBI ID   WP_014233117.1    Uniprot ID   A0AAN1CWJ2
Organism   Vibrio sp. EJY3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3095018..3105557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS14020 (VEJY3_13865) - 3095342..3095674 (-) 333 WP_014233113.1 hypothetical protein -
  VEJY3_RS14025 (VEJY3_13870) gspM 3095667..3096317 (-) 651 WP_014233114.1 type II secretion system protein GspM -
  VEJY3_RS14030 (VEJY3_13875) - 3096314..3097759 (-) 1446 WP_014233115.1 hypothetical protein -
  VEJY3_RS14035 (VEJY3_13880) csrD 3097771..3099780 (-) 2010 WP_031334688.1 RNase E specificity factor CsrD -
  VEJY3_RS14040 (VEJY3_13885) ssb 3100018..3100557 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  VEJY3_RS14045 (VEJY3_13890) qstR 3100835..3101479 (+) 645 WP_014233118.1 LuxR C-terminal-related transcriptional regulator Regulator
  VEJY3_RS14050 (VEJY3_13895) galU 3101659..3102531 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VEJY3_RS14055 (VEJY3_13900) uvrA 3102680..3105502 (+) 2823 WP_014233120.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19685.83 Da        Isoelectric Point: 5.2257

>NTDB_id=43104 VEJY3_RS14040 WP_014233117.1 3100018..3100557(-) (ssb) [Vibrio sp. EJY3]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPAMGGQAPQQGGWGQPQQPAQPQYNAPQQQAPKQSAPQ
QPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=43104 VEJY3_RS14040 WP_014233117.1 3100018..3100557(-) (ssb) [Vibrio sp. EJY3]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAACCTAGGTAACGACCCTGAAATTCGTTACATGCCGAATGG
CGGTGCAGTAGCAAACATTACTATTGCAACCTCTGATTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGAGTTGTGCTGTTTGGCAAACTTGCGGAAGTTGCTGGCGAATACCTACGTAAAGGCTCACAAGTTTACGTT
GAAGGACAACTTCAAACGCGTAAATGGCAAGATCAGAGTGGTCAAGACCGTTACTCAACTGAAGTTGTGGTTCAGGGCTT
CAATGGCGTAATGCAAATGCTGGGTGGTCGCGCTCAAGGTGGCGCTCCTGCTATGGGTGGCCAGGCACCTCAGCAAGGTG
GTTGGGGTCAGCCTCAGCAACCAGCTCAGCCGCAATACAATGCGCCTCAGCAACAAGCTCCAAAGCAATCGGCTCCACAA
CAGCCTCAGCAGCAGTACAATGAGCCACCAATGGATTTTGACGACGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.328

100

0.821
  ssb Glaesserella parasuis strain SC1401

56.614

100

0.598
  ssb Neisseria meningitidis MC58

46.667

100

0.469
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.469

Multiple sequence alignment