Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   VEJY3_RS14045 Genome accession   NC_016613
Coordinates   3100835..3101479 (+) Length   214 a.a.
NCBI ID   WP_014233118.1    Uniprot ID   -
Organism   Vibrio sp. EJY3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3095835..3106479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEJY3_RS14030 (VEJY3_13875) - 3096314..3097759 (-) 1446 WP_014233115.1 hypothetical protein -
  VEJY3_RS14035 (VEJY3_13880) csrD 3097771..3099780 (-) 2010 WP_031334688.1 RNase E specificity factor CsrD -
  VEJY3_RS14040 (VEJY3_13885) ssb 3100018..3100557 (-) 540 WP_014233117.1 single-stranded DNA-binding protein Machinery gene
  VEJY3_RS14045 (VEJY3_13890) qstR 3100835..3101479 (+) 645 WP_014233118.1 LuxR C-terminal-related transcriptional regulator Regulator
  VEJY3_RS14050 (VEJY3_13895) galU 3101659..3102531 (+) 873 WP_014233119.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  VEJY3_RS14055 (VEJY3_13900) uvrA 3102680..3105502 (+) 2823 WP_014233120.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24459.46 Da        Isoelectric Point: 9.9863

>NTDB_id=43105 VEJY3_RS14045 WP_014233118.1 3100835..3101479(+) (qstR) [Vibrio sp. EJY3]
MKKSAYARKLFLISMEENAPQKVAALEKYIEIGIPVISTDALMEAKPKHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYADESLERIGEGLKGIINGQNWLPRNVSSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQNGASNSRMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=43105 VEJY3_RS14045 WP_014233118.1 3100835..3101479(+) (qstR) [Vibrio sp. EJY3]
ATGAAAAAGTCAGCTTACGCCAGAAAGCTATTTCTGATCAGTATGGAAGAGAATGCGCCCCAAAAGGTAGCGGCACTGGA
GAAGTACATCGAGATCGGTATCCCAGTGATCTCGACGGATGCTTTAATGGAAGCGAAGCCGAAACATCGTAATAAAATCT
TACTCATCGATTTCAGTGAACATAAATCGCTTGTTCAGTCGATAAAGAACTTGCCACTGGTATGGAAGAACTTTGAAACA
GTGATTTTTAATGTCCCAAAACGCCTGACCACGGATGAGCTGCTCTCTTTCGGCCAGCTAAAAGGCGTATTCTATGCCGA
CGAATCGCTTGAACGAATTGGGGAAGGATTAAAAGGCATCATTAATGGCCAAAACTGGTTACCTCGCAATGTGTCCAGCC
AGCTGCTTCACTACTACCGCAATGTGATCAATACCCATACCGCACCCGCGACCGTGGATCTTACCATTCGGGAATTACAA
GTGTTGCGCTGTCTTCAAAATGGGGCATCCAATAGCCGAATGGCAGAAGAGTTATTTGTGAGCGAGTTTACGATTAAGTC
TCACCTGTACCAGATTTTTAAAAAGCTCTCGGTGAAAAACCGCGTACAAGCGATTGCTTGGGCTGATCAGAATCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

90.187

100

0.902
  qstR Vibrio campbellii strain DS40M4

88.318

100

0.883
  qstR Vibrio cholerae strain A1552

54.419

100

0.547

Multiple sequence alignment