Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IPMB12_RS09140 Genome accession   NZ_CP050253
Coordinates   2006536..2007039 (-) Length   167 a.a.
NCBI ID   WP_166917024.1    Uniprot ID   A0A6G9IE17
Organism   Zophobihabitans entericus strain IPMB12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2001536..2012039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IPMB12_RS09120 (IPMB12_09120) - 2002121..2002855 (+) 735 WP_166917017.1 glucosamine-6-phosphate deaminase -
  IPMB12_RS09125 (IPMB12_09125) - 2003001..2003693 (+) 693 WP_166917019.1 DUF2461 domain-containing protein -
  IPMB12_RS09130 (IPMB12_09130) - 2003760..2005241 (-) 1482 WP_166917021.1 fumarate hydratase -
  IPMB12_RS09135 (IPMB12_09135) pyrC 2005417..2006460 (+) 1044 WP_166917023.1 dihydroorotase -
  IPMB12_RS09140 (IPMB12_09140) ssb 2006536..2007039 (-) 504 WP_166917024.1 single-stranded DNA-binding protein Machinery gene
  IPMB12_RS09145 (IPMB12_09145) uvrA 2007311..2010136 (+) 2826 Protein_1772 excinuclease ABC subunit UvrA -
  IPMB12_RS09150 (IPMB12_09150) plsY 2010423..2011022 (+) 600 WP_166917026.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18160.08 Da        Isoelectric Point: 4.9468

>NTDB_id=430806 IPMB12_RS09140 WP_166917024.1 2006536..2007039(-) (ssb) [Zophobihabitans entericus strain IPMB12]
MASRGINKVILVGNLGQDPEVRYLPNGGAVTNISIATSETWKDKQTGEQKDRTEWHRVVIFGKLAEIAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYSTEVVVNIGGVMQILSSRSAGEGAGQQSWGQSPNNQSSAPAASRPAQQAAPQQPVSNEPPMD
FDDDIPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=430806 IPMB12_RS09140 WP_166917024.1 2006536..2007039(-) (ssb) [Zophobihabitans entericus strain IPMB12]
ATGGCAAGTCGCGGTATCAATAAAGTAATTCTTGTAGGTAACCTTGGACAAGATCCTGAGGTGCGTTATTTACCTAATGG
TGGAGCGGTCACCAATATCAGTATTGCTACTTCGGAAACATGGAAAGATAAACAAACTGGCGAACAGAAAGATCGTACTG
AATGGCACCGTGTGGTTATTTTCGGTAAATTAGCAGAAATCGCAGGTGAATATTTGAAAAAGGGTTCACAAGTTTATATT
GAAGGTTCACTACAAACGCGTAAATGGCAGGATCAATCAGGTCAGGACCGTTACTCAACAGAAGTTGTTGTTAACATCGG
TGGTGTGATGCAAATTCTTAGCTCTCGTTCAGCGGGTGAAGGCGCAGGCCAACAAAGCTGGGGACAAAGTCCTAACAATC
AATCATCAGCGCCGGCAGCATCTCGCCCTGCTCAACAGGCTGCACCACAGCAACCAGTGAGCAATGAACCGCCGATGGAT
TTTGATGATGATATTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G9IE17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

67.582

100

0.737
  ssb Glaesserella parasuis strain SC1401

53.005

100

0.581
  ssb Neisseria gonorrhoeae MS11

49.432

100

0.521
  ssb Neisseria meningitidis MC58

48.295

100

0.509
  ssb Latilactobacillus sakei subsp. sakei 23K

36.313

100

0.389