Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HAP32_RS11155 Genome accession   NZ_CP050171
Coordinates   2395793..2397316 (+) Length   507 a.a.
NCBI ID   WP_166733647.1    Uniprot ID   -
Organism   Serratia fonticola strain CPSE11     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2390793..2402316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HAP32_RS11130 (HAP32_02200) ilvE 2390995..2391921 (-) 927 WP_021181823.1 branched-chain-amino-acid transaminase -
  HAP32_RS11135 (HAP32_02201) ilvM 2391943..2392200 (-) 258 WP_021181824.1 acetolactate synthase 2 small subunit -
  HAP32_RS11140 (HAP32_02202) ilvG 2392197..2393843 (-) 1647 WP_166735120.1 acetolactate synthase 2 catalytic subunit -
  HAP32_RS11145 ilvL 2393985..2394083 (-) 99 WP_071681478.1 ilv operon leader peptide -
  HAP32_RS11150 (HAP32_02203) - 2394217..2395449 (-) 1233 WP_166733646.1 MFS transporter -
  HAP32_RS11155 (HAP32_02204) comM 2395793..2397316 (+) 1524 WP_166733647.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HAP32_RS11160 (HAP32_02205) - 2397345..2397683 (-) 339 WP_021181829.1 DUF413 domain-containing protein -
  HAP32_RS11165 (HAP32_02206) hdfR 2397803..2398630 (+) 828 WP_166733648.1 HTH-type transcriptional regulator HdfR -
  HAP32_RS11170 (HAP32_02207) yjfF 2398635..2399627 (-) 993 WP_166733649.1 galactofuranose ABC transporter, permease protein YjfF -
  HAP32_RS11175 (HAP32_02208) ytfT 2399624..2400625 (-) 1002 WP_059199401.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  HAP32_RS11180 (HAP32_02209) ytfR 2400643..2402157 (-) 1515 WP_166733650.1 galactofuranose ABC transporter, ATP-binding protein YtfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54672.01 Da        Isoelectric Point: 8.5222

>NTDB_id=430477 HAP32_RS11155 WP_166733647.1 2395793..2397316(+) (comM) [Serratia fonticola strain CPSE11]
MSLAVIYTRATIGVQAPSVMVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPADKLAHYEFLGELALSGALRAVHGAIPAAIAAAEAKRELILAAANGKEAGLLPNSTTRVAEHL
LEVCAFLQGKGDLPIAVAPPAAATSTETADLQEVIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLNGLLPPLSD
REALESVAVASLLHHPDETLPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERRVLDALREPLE
SGEIVISRASAKVRFPARVQLIAAMNPSPTGHYQGIHNRTPPQQILRYLGRLSGPFLDRFDLSIEVPLLPPGVLAKQHHA
GESSQQVRQRVLVARERQLARAGKVNALLSNREVDRDCHLPAAEAEFLERTLSQLGLSVRAWHRILKVARTLADLTGEQQ
IDKRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=430477 HAP32_RS11155 WP_166733647.1 2395793..2397316(+) (comM) [Serratia fonticola strain CPSE11]
ATGTCACTGGCGGTAATCTATACCCGTGCCACGATCGGCGTGCAGGCACCTTCGGTCATGGTTGAAGTCCATATCAGCAA
CGGATTACCCGGCCTCACGCTGGTCGGTCTACCGGAAACCACGGTGAAAGAAGCCCGTGACCGGGTGCGCAGCGCACTGA
TCAACAACGGCTTCACCTTTCCGGCCAAACGCATCACCGTCAATCTGGCACCCGCCGATTTGCCTAAGGAAGGGGGGCGC
TATGATTTACCCATTGCGCTGGCCATTCTGGCGGCCTCAGAACAGTTGCCAGCAGATAAGTTGGCGCACTATGAGTTCCT
GGGTGAATTGGCGCTTTCTGGCGCATTGAGGGCGGTGCACGGCGCCATTCCGGCGGCAATAGCGGCTGCCGAGGCCAAAC
GTGAGCTGATCCTAGCAGCGGCCAACGGCAAAGAGGCAGGGTTGCTTCCCAACAGCACAACCCGAGTCGCGGAACATTTG
CTGGAGGTTTGCGCTTTTTTGCAAGGTAAGGGGGATCTGCCAATCGCCGTAGCGCCCCCTGCGGCCGCCACGTCAACGGA
AACTGCCGACCTGCAGGAAGTCATTGGCCAGGAGCAGGCAAAACGAGCGTTGGAAATTGCTGCGGCCGGGGGCCACAACC
TATTGCTGCTTGGCCCCCCGGGCACCGGCAAAACCATGCTGGCCAGCCGCCTCAACGGTTTGCTGCCGCCGTTAAGCGAT
CGGGAGGCGCTGGAAAGCGTCGCCGTTGCCAGCTTATTGCATCACCCTGATGAAACTCTGCCCTGGCGACAGCGGCCGTT
TCGTGCCCCGCATCACAGCGCTTCGATGGCTGCCCTGGTTGGAGGCGGTTCCTTGCCACGGCCAGGGGAAATCTCCATGG
CGCACAACGGCGTGCTATTTCTGGATGAGTTACCCGAATTTGAACGGAGAGTGTTAGATGCGTTGCGTGAGCCACTGGAA
TCCGGTGAAATCGTCATCTCACGCGCCAGCGCCAAGGTACGCTTCCCAGCGAGGGTGCAGCTGATTGCGGCGATGAACCC
CAGCCCAACCGGGCACTATCAGGGCATACACAACCGCACGCCACCGCAGCAGATTTTGCGCTACCTCGGCAGGCTCTCTG
GCCCCTTCCTCGATCGATTTGATTTATCGATTGAGGTGCCACTGCTGCCACCGGGCGTACTGGCCAAGCAGCACCATGCG
GGGGAAAGCAGCCAACAGGTACGTCAACGGGTGCTGGTGGCGCGCGAGCGGCAGCTGGCACGTGCAGGTAAAGTGAATGC
GCTGTTGAGTAACCGCGAGGTGGATCGGGATTGCCATTTACCTGCAGCGGAAGCGGAGTTTTTAGAAAGAACGCTGAGCC
AACTGGGATTATCGGTTCGAGCCTGGCATCGCATCCTGAAAGTGGCACGCACACTGGCCGATTTGACGGGGGAACAACAG
ATTGATAAACGCCATCTCAGCGAAGCGCTCAGCTATCGCAGTATGGATCGCCTGCTGCTGCAGCTACACCGCAGCCTGGA
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-389)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.206

99.803

0.661
  comM Vibrio cholerae strain A1552

66.534

99.014

0.659
  comM Glaesserella parasuis strain SC1401

64.694

100

0.647
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

50.403

97.83

0.493
  comM Legionella pneumophila strain ERS1305867

50.403

97.83

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.882

100

0.462