Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HBA47_RS01130 Genome accession   NZ_CP050136
Coordinates   212430..213932 (-) Length   500 a.a.
NCBI ID   WP_019389796.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23332     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 207430..218932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA47_RS01095 (HBA47_01100) aphA 207833..208564 (+) 732 WP_003791412.1 acid phosphatase AphA -
  HBA47_RS01100 (HBA47_01105) - 208668..209363 (+) 696 WP_019389800.1 hypothetical protein -
  HBA47_RS01105 (HBA47_01110) - 209360..210460 (+) 1101 WP_019389799.1 hypothetical protein -
  HBA47_RS01110 (HBA47_01115) murU 210534..211235 (-) 702 WP_019389798.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  HBA47_RS01115 (HBA47_01120) - 211250..211582 (-) 333 WP_003785140.1 zinc ribbon domain-containing protein YjdM -
  HBA47_RS01120 (HBA47_01125) - 211616..211789 (-) 174 WP_003785141.1 hypothetical protein -
  HBA47_RS01125 (HBA47_01130) - 211851..212315 (-) 465 WP_038310549.1 hypothetical protein -
  HBA47_RS01130 (HBA47_01135) comM 212430..213932 (-) 1503 WP_019389796.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HBA47_RS01135 (HBA47_01140) - 213943..214221 (-) 279 WP_003785148.1 accessory factor UbiK family protein -
  HBA47_RS01140 (HBA47_01145) - 214520..215098 (+) 579 WP_019389795.1 biliverdin-producing heme oxygenase -
  HBA47_RS11320 - 215164..215292 (-) 129 WP_003785152.1 hypothetical protein -
  HBA47_RS01145 (HBA47_01150) - 215372..216208 (-) 837 Protein_210 adenosine deaminase family protein -
  HBA47_RS01150 (HBA47_01155) - 216483..216731 (+) 249 WP_230311240.1 transposase family protein -
  HBA47_RS01155 (HBA47_01160) - 216759..217325 (+) 567 WP_060536953.1 ISAs1 family transposase -
  HBA47_RS01160 (HBA47_01165) - 217365..218498 (-) 1134 WP_019389792.1 hypothetical protein -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53970.74 Da        Isoelectric Point: 7.5341

>NTDB_id=430279 HBA47_RS01130 WP_019389796.1 212430..213932(-) (comM) [Kingella kingae strain ATCC 23332]
MTFAVVNSRALNGMNAPLVEVEVHLANGLPQCNIVGLPDTEVKESRDRVRAAILQSGFEFPMQKITVNLAPADLPKESGR
FDLPIAIGILAASGQIIANDLERYEFAGELALSGNLRPIRGALAMAWQGQQAGRAFVLPSDNAIQAASMGQITAYGANSL
LEVAAHLNGTQSLAPSRLPDVPKQPAPDSLPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
TDDELTSVWALRSLLPQFTGSLQHDKRRPFRAPHHSASSAALVGGGSDPKPGEISLAHQGVLFLDELPEFDRRVLEMLRE
PLESGEIHISRATRQATYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPDSVKRYRDRISGPLLDRIDLTIEVPTLSASELV
SAQQGEDSATVLQRVLAARERQYARQGKINAALSSSELDQVAQIQAEAREALGQILEKLSLSARSFHRILRVARTLADLA
QDDEVNRAHIIRAVSFRRAV

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=430279 HBA47_RS01130 WP_019389796.1 212430..213932(-) (comM) [Kingella kingae strain ATCC 23332]
ATGACGTTTGCGGTGGTCAATAGTCGTGCGCTCAATGGTATGAACGCGCCTTTGGTGGAAGTGGAAGTGCATTTGGCAAA
CGGTTTGCCGCAATGCAACATTGTGGGTTTGCCCGACACCGAAGTCAAAGAAAGTCGCGACCGCGTGCGTGCGGCAATTT
TGCAAAGTGGCTTTGAGTTCCCCATGCAAAAAATCACGGTCAATCTTGCGCCTGCGGATTTGCCCAAGGAATCGGGGCGA
TTTGATTTGCCGATTGCGATTGGTATTTTGGCAGCCAGTGGGCAAATTATCGCCAACGATTTGGAGCGATACGAATTTGC
TGGCGAATTAGCGTTGTCGGGCAACTTGCGTCCGATTCGCGGTGCGTTGGCAATGGCGTGGCAGGGTCAGCAGGCAGGCA
GAGCGTTTGTGTTGCCCAGCGACAATGCGATTCAAGCCGCCAGCATGGGGCAAATCACGGCATACGGCGCGAACAGTTTG
TTGGAAGTGGCGGCGCATTTAAACGGCACACAAAGCCTTGCGCCCAGCCGTTTGCCCGATGTACCAAAGCAGCCTGCACC
CGATTCTTTGCCCGATTTGCGCGATGTGAAAGGACAGCACACGGCGCGATTGGCATTGGAAATTGCTGCAGCAGGCGGAC
ACAGTTTGTTGATGATGGGGCCACCAGGCACCGGCAAATCCATGCTCGCGCAACGTTTGCCGTCTATTTTGCCGCCTTTG
ACCGATGATGAATTGACCAGCGTCTGGGCGTTGCGCTCGCTGTTGCCGCAGTTCACAGGCAGCCTGCAACACGATAAACG
CCGACCGTTTCGTGCGCCACATCATTCGGCAAGTTCTGCTGCGTTGGTGGGTGGCGGTTCAGACCCGAAGCCCGGCGAAA
TTTCGTTGGCGCATCAAGGCGTGTTGTTTTTAGACGAATTGCCCGAATTTGACCGCCGTGTGTTGGAAATGTTGCGCGAA
CCGTTGGAAAGCGGCGAAATTCATATTTCTCGGGCGACGCGGCAGGCGACTTATCCAGCCAAATTTCAATTAGTGGCGGC
GATGAATCCTTGTCCGTGCGGCTATTTGGGACACCCAAGCAAACCGTGTCGCTGCACGCCCGATAGCGTCAAACGATACC
GTGACCGTATTTCGGGCCCGCTGCTTGACCGCATTGATTTGACGATTGAAGTACCCACCCTATCGGCATCGGAACTGGTT
AGCGCACAACAAGGCGAAGACAGCGCAACCGTGTTACAGCGCGTGTTGGCAGCGCGAGAACGCCAATATGCGCGACAAGG
CAAAATCAACGCGGCATTGTCGTCCAGCGAATTAGACCAAGTGGCGCAAATTCAAGCCGAAGCGCGTGAAGCGTTGGGGC
AGATTTTGGAAAAATTGTCGCTGTCGGCGCGCAGTTTTCATCGTATTTTGCGTGTGGCGCGAACCTTGGCGGATTTGGCG
CAAGACGATGAAGTCAATCGGGCGCACATTATTCGGGCAGTAAGTTTTCGCCGTGCTGTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-398)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.707

99.8

0.536
  comM Vibrio campbellii strain DS40M4

51.606

99.6

0.514
  comM Haemophilus influenzae Rd KW20

49.703

100

0.502
  comM Glaesserella parasuis strain SC1401

49.4

100

0.494
  comM Legionella pneumophila str. Paris

47.316

100

0.476
  comM Legionella pneumophila strain ERS1305867

47.316

100

0.476
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44

100

0.44