Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HBA48_RS01435 Genome accession   NZ_CP050135
Coordinates   272071..273573 (-) Length   500 a.a.
NCBI ID   WP_003791405.1    Uniprot ID   -
Organism   Kingella kingae strain ATCC 23331     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 267071..278573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA48_RS01400 (HBA48_01410) aphA 267480..268211 (+) 732 WP_003791412.1 acid phosphatase AphA -
  HBA48_RS01405 (HBA48_01415) - 268315..268998 (+) 684 WP_164538309.1 hypothetical protein -
  HBA48_RS01410 (HBA48_01420) - 268995..270095 (+) 1101 WP_038310550.1 hypothetical protein -
  HBA48_RS01415 (HBA48_01425) murU 270169..270870 (-) 702 WP_003785138.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  HBA48_RS01420 (HBA48_01430) - 270885..271217 (-) 333 WP_003785140.1 zinc ribbon domain-containing protein YjdM -
  HBA48_RS01425 (HBA48_01435) - 271251..271424 (-) 174 WP_003785141.1 hypothetical protein -
  HBA48_RS01430 (HBA48_01440) - 271486..271956 (-) 471 WP_003791406.1 hypothetical protein -
  HBA48_RS01435 (HBA48_01445) comM 272071..273573 (-) 1503 WP_003791405.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HBA48_RS01440 (HBA48_01450) - 273584..273862 (-) 279 WP_003791402.1 accessory factor UbiK family protein -
  HBA48_RS01445 (HBA48_01455) - 274161..274739 (+) 579 WP_003785150.1 biliverdin-producing heme oxygenase -
  HBA48_RS10905 - 274805..274933 (-) 129 WP_003785152.1 hypothetical protein -
  HBA48_RS01450 (HBA48_01460) - 275013..275846 (-) 834 Protein_269 adenosine deaminase family protein -
  HBA48_RS01455 (HBA48_01465) - 276241..276984 (+) 744 WP_003791395.1 IS110 family transposase -
  HBA48_RS10690 - 277240..277398 (+) 159 Protein_271 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54028.78 Da        Isoelectric Point: 7.2939

>NTDB_id=430252 HBA48_RS01435 WP_003791405.1 272071..273573(-) (comM) [Kingella kingae strain ATCC 23331]
MTFAVVNSRALNGMNAPLVEVEVHLANGLPQCNIVGLPDTEVKESRDRVRAAILQSGFEFPMQKITVNLAPADLPKESGR
FDLPIAIGILAASGQIIANDLERYEFAGELALSGNLRPIRGALAMAWQGQQAGRAFVLPSDNAIQAASMGQITAYGANSL
LEVAAHLNGTQSLAPSRLPDVPKQPAPDSLPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
TDDELTSVWALRSLLPQFTDSLQHDKRRPFRAPHHSASSAALVGGGSDPKPGEISLAHQGVLFLDELPEFDRRVLEMLRE
PLESGEIHISRATRQATYPAKFQLVAAMNPCPCGYLGHPSKPCRCTPDSVKRYRDRISGPLLDRIDLTIEVPTLSAAELV
SAQQGEDSATVLQRVLAARERQYARQGKINAALSSSELDQVAQIQSEAREALGQILEKLSLSARSFHRILRVARTLADLA
QDDEVNRAHIIRAVSFRRAV

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=430252 HBA48_RS01435 WP_003791405.1 272071..273573(-) (comM) [Kingella kingae strain ATCC 23331]
ATGACGTTTGCGGTGGTCAATAGTCGTGCGCTCAATGGTATGAACGCGCCTTTGGTGGAAGTGGAAGTGCATTTGGCAAA
CGGTTTGCCGCAATGCAACATTGTGGGTTTGCCCGACACCGAAGTCAAAGAAAGTCGCGACCGCGTGCGTGCGGCAATTT
TGCAAAGTGGCTTTGAGTTCCCCATGCAAAAAATCACGGTCAATCTTGCGCCTGCGGATTTGCCCAAGGAATCGGGGCGA
TTTGATTTGCCGATTGCAATTGGTATTTTGGCAGCCAGTGGGCAAATTATCGCCAACGATTTGGAGCGATACGAATTTGC
TGGCGAATTAGCGTTGTCGGGCAACTTGCGTCCGATTCGCGGTGCGTTGGCAATGGCGTGGCAGGGTCAGCAAGCAGGCA
GAGCGTTTGTGTTGCCCAGCGACAATGCGATTCAAGCCGCCAGCATGGGGCAAATCACGGCATACGGCGCGAACAGTTTG
TTGGAAGTGGCGGCGCATTTAAACGGCACACAAAGCCTTGCGCCCAGCCGTTTGCCCGATGTACCAAAGCAGCCTGCACC
CGATTCTTTGCCCGATTTGCGCGATGTGAAAGGACAGCACACGGCGCGATTGGCATTGGAAATTGCTGCAGCAGGCGGAC
ACAGTTTGTTGATGATGGGGCCACCAGGCACCGGCAAATCCATGCTCGCGCAACGTTTGCCGTCTATTTTGCCGCCTTTG
ACCGATGATGAATTGACCAGCGTCTGGGCGTTGCGCTCGCTGTTGCCGCAGTTCACAGACAGCCTGCAACACGATAAACG
CCGACCGTTTCGTGCGCCACATCATTCGGCAAGTTCTGCTGCGTTGGTGGGTGGCGGTTCAGACCCGAAGCCCGGCGAAA
TTTCGTTGGCGCATCAAGGCGTGTTGTTTTTAGACGAATTGCCCGAATTTGACCGCCGTGTGTTGGAAATGTTGCGCGAA
CCGTTGGAAAGCGGCGAAATTCATATTTCTCGGGCGACGCGGCAGGCGACTTATCCAGCCAAATTTCAATTAGTGGCGGC
GATGAATCCTTGTCCGTGCGGCTATTTGGGACACCCAAGCAAACCGTGTCGCTGCACGCCCGATAGCGTCAAACGATACC
GTGACCGTATTTCGGGCCCGCTGCTTGACCGCATTGATTTGACGATTGAAGTACCCACCCTATCGGCAGCGGAACTGGTT
AGCGCACAACAAGGCGAAGACAGCGCAACCGTGTTACAGCGCGTGTTAGCAGCGCGAGAACGCCAATATGCGCGACAAGG
CAAAATCAACGCAGCATTGTCGTCCAGCGAATTAGACCAAGTGGCGCAAATTCAATCCGAAGCGCGTGAAGCGTTGGGGC
AGATTTTGGAAAAATTGTCGCTGTCGGCGCGCAGTTTTCATCGCATTTTGCGTGTGGCACGAACGTTGGCGGATTTGGCG
CAAGACGATGAAGTTAATCGGGCGCACATTATTCGAGCAGTAAGTTTTCGCCGTGCTGTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-398)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.707

99.8

0.536
  comM Vibrio campbellii strain DS40M4

51.503

99.8

0.514
  comM Haemophilus influenzae Rd KW20

49.703

100

0.502
  comM Glaesserella parasuis strain SC1401

49.4

100

0.494
  comM Legionella pneumophila str. Paris

47.515

100

0.478
  comM Legionella pneumophila strain ERS1305867

47.515

100

0.478
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44

100

0.44