Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   HBA50_RS07530 Genome accession   NZ_CP050133
Coordinates   1508406..1509095 (-) Length   229 a.a.
NCBI ID   WP_045498965.1    Uniprot ID   A0A0F2CRR8
Organism   Streptococcus cristatus ATCC 51100     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503406..1514095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS07510 (HBA50_07510) - 1503532..1503762 (-) 231 WP_005592360.1 DUF1797 family protein -
  HBA50_RS07515 (HBA50_07515) clpE 1504004..1506277 (+) 2274 WP_045498971.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  HBA50_RS07520 (HBA50_07520) - 1506363..1506767 (+) 405 Protein_1471 transposase -
  HBA50_RS07525 (HBA50_07525) scnK 1507095..1508405 (-) 1311 WP_045498968.1 sensor histidine kinase KdpD Regulator
  HBA50_RS07530 (HBA50_07530) scnR 1508406..1509095 (-) 690 WP_045498965.1 response regulator transcription factor Regulator
  HBA50_RS07535 (HBA50_07535) - 1509267..1510175 (+) 909 WP_008809655.1 ABC transporter ATP-binding protein -
  HBA50_RS07540 (HBA50_07540) - 1510175..1510915 (+) 741 WP_045498958.1 ABC transporter permease -
  HBA50_RS07545 (HBA50_07545) - 1510912..1511640 (+) 729 WP_045498955.1 ABC transporter permease -
  HBA50_RS07550 (HBA50_07550) - 1511756..1513012 (-) 1257 WP_045499770.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26280.65 Da        Isoelectric Point: 6.5039

>NTDB_id=430231 HBA50_RS07530 WP_045498965.1 1508406..1509095(-) (scnR) [Streptococcus cristatus ATCC 51100]
MNYKEKKILILDDNPEILEMVQESLIIAGFSNLTSVQSQKEALEQFEEKSFDLVILDIMLPEGSGFEVLKGIRKTSTVPV
LFLSAISDIEKQYQGFELGADDYIIKPFRPRDLELRILSILKRAYPEKEDTLVLPACQVHFSQALITKGKLEIQLTAKEY
SILKILYDNKNRIVTFDQLLEKVWGLQYQGYDNTLMAHIRKIRQKIEANPSKPESLITVKGLGYKLKVN

Nucleotide


Download         Length: 690 bp        

>NTDB_id=430231 HBA50_RS07530 WP_045498965.1 1508406..1509095(-) (scnR) [Streptococcus cristatus ATCC 51100]
ATGAATTATAAAGAAAAGAAGATTTTAATTTTAGACGATAACCCAGAAATTTTAGAAATGGTGCAAGAATCATTGATCAT
TGCTGGGTTTAGCAATCTAACAAGTGTACAATCACAAAAAGAAGCTTTGGAGCAATTTGAAGAAAAATCTTTTGATTTAG
TTATTTTAGACATTATGCTGCCTGAAGGATCAGGATTTGAAGTTTTAAAAGGTATCCGTAAGACTTCAACGGTTCCTGTT
TTGTTTTTGTCGGCAATCTCCGATATAGAAAAACAATATCAGGGCTTTGAGCTAGGGGCAGATGACTATATTATCAAGCC
TTTCCGCCCAAGAGATTTGGAGCTGCGTATTCTTTCCATCTTAAAAAGAGCCTATCCCGAAAAGGAAGATACCCTTGTTT
TGCCTGCTTGCCAGGTGCATTTTAGCCAAGCCTTGATTACCAAAGGAAAACTAGAGATTCAGCTGACAGCTAAGGAATAC
AGTATTCTTAAGATCCTATATGATAATAAGAATCGCATTGTCACTTTTGACCAACTCTTAGAAAAGGTCTGGGGATTACA
ATACCAAGGCTATGATAATACCCTAATGGCTCATATTCGTAAGATTCGACAAAAGATTGAAGCCAATCCTTCTAAACCAG
AAAGCTTAATAACGGTTAAAGGTTTGGGTTACAAACTAAAGGTGAATTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(152-226)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CRR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

86.9

100

0.869
  micA Streptococcus pneumoniae Cp1015

38.197

100

0.389
  vicR Streptococcus mutans UA159

37.069

100

0.376