Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   HBA50_RS07000 Genome accession   NZ_CP050133
Coordinates   1399793..1400752 (-) Length   319 a.a.
NCBI ID   WP_045499194.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1394793..1405752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS06980 (HBA50_06980) - 1395381..1395959 (-) 579 WP_179856632.1 LURP-one-related family protein -
  HBA50_RS06985 (HBA50_06985) prsA 1396098..1397174 (-) 1077 WP_045499200.1 peptidylprolyl isomerase PrsA -
  HBA50_RS06990 (HBA50_06990) - 1397285..1397968 (-) 684 WP_045499198.1 O-methyltransferase -
  HBA50_RS06995 (HBA50_06995) pepF 1397970..1399772 (-) 1803 WP_045499196.1 oligoendopeptidase F Regulator
  HBA50_RS07000 (HBA50_07000) coiA 1399793..1400752 (-) 960 WP_045499194.1 competence protein CoiA Machinery gene
  HBA50_RS07005 (HBA50_07005) - 1400910..1402076 (-) 1167 WP_045499776.1 MFS transporter -
  HBA50_RS07010 (HBA50_07010) - 1402164..1403483 (-) 1320 WP_235285276.1 D-alanyl-D-alanine carboxypeptidase -
  HBA50_RS07015 (HBA50_07015) - 1403604..1404311 (-) 708 WP_045499188.1 glucosamine-6-phosphate deaminase -
  HBA50_RS07020 (HBA50_07020) queA 1404629..1405657 (+) 1029 WP_045499185.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 37719.45 Da        Isoelectric Point: 8.9995

>NTDB_id=430225 HBA50_RS07000 WP_045499194.1 1399793..1400752(-) (coiA) [Streptococcus cristatus ATCC 51100]
MLLAKNEEGILLNAMEKQPSLGEQTFCPACSGTVRFKKGRVMRPHFAHISLENCSFYVENESAEHLNLKAGLYSWGKQSQ
EIQVEAFLPEIRQIADLLIDGSIALEVQCSPLSQERLEERTLSYRQHGYQVLWLLGKKLWLKQSLTKLQKDFLYFSQNMG
FHLWELDERKQELRLKYLIHEDLHGRAQYKVKSFPFGQGCLLSVLRSPFQKQGLESYLAKQDPEICRYVRQQLYYRQPRW
MKLQAQLYQKGDNLLTKSAEDFYPQVRPVQASSFCQITRDLTPYYQHFHRYYHAEKNKQLQIIYPPIFYARISPTFMIE

Nucleotide


Download         Length: 960 bp        

>NTDB_id=430225 HBA50_RS07000 WP_045499194.1 1399793..1400752(-) (coiA) [Streptococcus cristatus ATCC 51100]
ATGTTGCTTGCGAAAAATGAAGAGGGGATTTTGCTGAATGCCATGGAAAAGCAGCCGTCCCTAGGCGAACAAACCTTTTG
TCCAGCCTGTTCGGGGACGGTCCGCTTCAAAAAAGGAAGAGTCATGCGACCGCATTTTGCTCATATTTCTCTTGAAAATT
GCTCATTTTATGTGGAAAATGAAAGTGCGGAGCATTTGAACTTGAAAGCTGGCCTTTATAGCTGGGGGAAGCAAAGTCAA
GAGATTCAGGTGGAGGCTTTTTTACCTGAGATAAGGCAGATTGCTGACCTTTTGATAGATGGTAGCATAGCGCTGGAGGT
CCAGTGTAGTCCACTCAGTCAGGAAAGACTTGAGGAACGGACGCTGTCTTATCGACAGCATGGCTATCAAGTTCTCTGGC
TCTTAGGCAAGAAATTATGGTTAAAACAGTCACTGACGAAACTGCAAAAGGACTTTCTTTATTTCAGTCAAAATATGGGC
TTTCATCTTTGGGAATTGGATGAGAGAAAGCAGGAGCTTCGGCTTAAATATCTCATTCACGAGGACTTGCATGGGCGAGC
TCAGTACAAGGTCAAATCCTTTCCTTTTGGCCAAGGCTGTCTTTTATCCGTCTTGCGCAGTCCCTTTCAAAAGCAGGGGT
TAGAGAGCTATCTGGCTAAGCAAGATCCGGAGATTTGTCGCTATGTTCGTCAGCAGCTTTATTACCGGCAGCCTCGTTGG
ATGAAGCTCCAAGCCCAGCTCTATCAAAAAGGAGACAATCTTCTGACCAAGTCAGCCGAGGATTTTTATCCGCAGGTTCG
GCCTGTTCAAGCCAGCTCCTTTTGCCAAATAACAAGAGATTTGACTCCTTATTACCAGCACTTTCATCGCTATTATCATG
CTGAAAAAAATAAGCAGCTTCAAATTATCTATCCTCCGATATTTTATGCGAGGATTTCCCCCACTTTTATGATAGAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.812

100

0.53
  coiA Streptococcus pneumoniae Rx1

51.562

100

0.517
  coiA Streptococcus pneumoniae D39

51.562

100

0.517
  coiA Streptococcus pneumoniae R6

51.562

100

0.517
  coiA Streptococcus pneumoniae TIGR4

51.25

100

0.514
  coiA Lactococcus lactis subsp. cremoris KW2

42.105

100

0.426