Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   HBA50_RS06995 Genome accession   NZ_CP050133
Coordinates   1397970..1399772 (-) Length   600 a.a.
NCBI ID   WP_045499196.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392970..1404772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS06980 (HBA50_06980) - 1395381..1395959 (-) 579 WP_179856632.1 LURP-one-related family protein -
  HBA50_RS06985 (HBA50_06985) prsA 1396098..1397174 (-) 1077 WP_045499200.1 peptidylprolyl isomerase PrsA -
  HBA50_RS06990 (HBA50_06990) - 1397285..1397968 (-) 684 WP_045499198.1 O-methyltransferase -
  HBA50_RS06995 (HBA50_06995) pepF 1397970..1399772 (-) 1803 WP_045499196.1 oligoendopeptidase F Regulator
  HBA50_RS07000 (HBA50_07000) coiA 1399793..1400752 (-) 960 WP_045499194.1 competence protein CoiA Machinery gene
  HBA50_RS07005 (HBA50_07005) - 1400910..1402076 (-) 1167 WP_045499776.1 MFS transporter -
  HBA50_RS07010 (HBA50_07010) - 1402164..1403483 (-) 1320 WP_235285276.1 D-alanyl-D-alanine carboxypeptidase -
  HBA50_RS07015 (HBA50_07015) - 1403604..1404311 (-) 708 WP_045499188.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69175.27 Da        Isoelectric Point: 4.5366

>NTDB_id=430224 HBA50_RS06995 WP_045499196.1 1397970..1399772(-) (pepF) [Streptococcus cristatus ATCC 51100]
MAKQRNEIEEKYTWDLTTIFPTDEAFEAELAQVSEEVKKAASLAGHLLDSADSLLKTTEVQLDLMRRIEKLYSYAHMKND
QDTRVAKYQEYQAKGMTLYSEFGQSFAFYEPEFMAITEEQYQAFLAEQPALQLYQHYFDKLLEKKAHILTQREEELLAGA
GEIFGAAGETFAILDNADIVFPMVRDEDGNEVQLSHGNYITLVESKNREVRKEAYEALYSVYEQYQHTYAKTLQTNVKVH
NYNAKVRKFSSAREAALSADFIPESVYDSLVSAVNKHLPLLQRYIALRAKILGISDLKMYDMYTPLSETDYKFTYEEALA
KSEEVLAILGEDYLSRVKTAFSERWIDVHENQGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNHFLDGFRGTVFRQTQFAEFEHAIHKADQEGQVLTSEF
LNELYADLNEKYYGLKKEDNPQIQYEWARIPHFYYDYYVFQYSTGFAAASALAEKIVHGSQEDKDKYLDYLKAGNSDYPL
NVIKKAGVDMEKEDYLNAAFAVFERRLDEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=430224 HBA50_RS06995 WP_045499196.1 1397970..1399772(-) (pepF) [Streptococcus cristatus ATCC 51100]
ATGGCAAAACAAAGAAATGAAATTGAAGAAAAATATACTTGGGATTTGACAACAATTTTCCCAACAGATGAAGCCTTTGA
AGCAGAATTGGCGCAGGTTTCAGAAGAAGTGAAGAAGGCAGCTAGTCTGGCTGGACATTTGCTGGATTCGGCTGACAGTC
TCTTAAAAACGACTGAAGTGCAGTTGGACTTGATGCGCCGGATTGAAAAGCTTTATTCTTATGCTCACATGAAGAACGAC
CAGGATACTCGCGTGGCCAAGTATCAAGAATATCAGGCTAAGGGGATGACTCTTTACAGCGAATTTGGTCAAAGCTTTGC
CTTTTATGAGCCTGAATTTATGGCGATTACAGAAGAGCAATACCAAGCCTTCTTGGCTGAGCAGCCAGCCTTGCAGCTGT
ATCAGCATTATTTTGACAAGCTTTTGGAAAAGAAAGCCCACATCCTGACCCAGCGTGAAGAGGAGCTACTGGCTGGTGCT
GGTGAAATTTTTGGTGCAGCGGGCGAAACCTTTGCTATTTTGGATAATGCGGATATTGTCTTTCCGATGGTGCGTGACGA
AGATGGAAATGAAGTTCAGCTCAGCCACGGTAACTATATCACCCTGGTCGAGTCTAAGAATCGAGAAGTTCGTAAAGAAG
CTTACGAGGCTCTCTACAGCGTCTACGAGCAGTATCAGCATACCTACGCTAAGACTCTGCAGACCAATGTCAAGGTTCAC
AATTACAATGCGAAAGTCCGCAAGTTTTCATCTGCCCGTGAAGCAGCCTTGTCAGCGGACTTTATTCCAGAAAGTGTATA
CGATAGCTTAGTTTCAGCTGTTAATAAGCATTTGCCTCTTTTGCAGCGTTATATCGCTTTACGAGCAAAGATTTTAGGCA
TTTCTGATTTGAAGATGTATGATATGTACACACCTTTGTCAGAGACAGACTACAAGTTCACTTATGAGGAAGCCTTGGCT
AAGTCTGAGGAAGTTCTGGCTATTCTGGGTGAGGATTATTTGAGCCGAGTGAAGACAGCCTTCTCAGAGCGCTGGATTGA
TGTTCATGAAAATCAAGGCAAGCGCTCAGGGGCATACTCTGGCGGTTCTTACGACACAAACGCCTTTATGCTGCTCAACT
GGCAGGATACACTGGATAATCTCTTTACCTTGGTGCATGAGACAGGCCACAGTATGCACTCCAGCTACACCCGTGAGACC
CAGCCTTATGTCTATGGAGACTACTCTATCTTCCTAGCTGAGATTGCTTCAACGACCAATGAAAATATCCTGACAGAAAA
GCTCTTGGAAGAAGTAGAAGACGATGCTACCCGCTTTGCTATCCTCAATCACTTCTTGGATGGTTTCCGAGGTACGGTCT
TCCGTCAAACCCAGTTTGCTGAGTTTGAGCATGCTATCCACAAGGCTGACCAAGAAGGTCAAGTTTTGACCAGCGAGTTT
CTAAATGAACTCTATGCTGACTTGAATGAGAAATACTACGGCTTGAAAAAAGAAGACAATCCGCAGATTCAGTACGAATG
GGCTCGGATTCCGCATTTCTACTATGATTACTATGTTTTCCAATACTCTACAGGCTTTGCAGCTGCTTCTGCCTTGGCTG
AAAAGATTGTCCATGGCAGTCAGGAAGACAAGGATAAGTATCTGGACTATCTCAAAGCTGGGAACTCTGACTACCCACTC
AATGTCATCAAAAAAGCAGGTGTGGATATGGAGAAAGAAGACTACTTAAATGCTGCTTTTGCTGTTTTTGAGCGTCGCTT
GGACGAATTCGAAGCCTTGGTCGAGAAGTTGGGACTGGCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.128

99.333

0.687