Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   HBA50_RS06650 Genome accession   NZ_CP050133
Coordinates   1329457..1331697 (-) Length   746 a.a.
NCBI ID   WP_045499349.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1324457..1336697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS06630 (HBA50_06630) tuf 1325347..1326543 (-) 1197 WP_005590656.1 elongation factor Tu -
  HBA50_RS06635 (HBA50_06635) - 1326666..1327664 (-) 999 WP_045499358.1 anti sigma factor C-terminal domain-containing protein -
  HBA50_RS06640 (HBA50_06640) - 1327651..1328121 (-) 471 WP_179856623.1 sigma-70 family RNA polymerase sigma factor -
  HBA50_RS06645 (HBA50_06645) - 1328415..1329350 (-) 936 WP_045499352.1 DUF805 domain-containing protein -
  HBA50_RS06650 (HBA50_06650) comEC/celB 1329457..1331697 (-) 2241 WP_045499349.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HBA50_RS06655 (HBA50_06655) comEA/celA/cilE 1331678..1332373 (-) 696 WP_045499346.1 helix-hairpin-helix domain-containing protein Machinery gene
  HBA50_RS06660 (HBA50_06660) - 1332523..1333071 (-) 549 WP_045499343.1 HXXEE domain-containing protein -
  HBA50_RS06665 (HBA50_06665) - 1333150..1333890 (-) 741 WP_045499340.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  HBA50_RS06670 (HBA50_06670) - 1334048..1336387 (+) 2340 WP_045499337.1 cation-translocating P-type ATPase -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 85154.41 Da        Isoelectric Point: 9.3850

>NTDB_id=430220 HBA50_RS06650 WP_045499349.1 1329457..1331697(-) (comEC/celB) [Streptococcus cristatus ATCC 51100]
MSQWINKLPIKPIYFCLLLVLTYFAIYTSSLLAYLGLAVLLVRLFWLYSTRNSLLVLVLLSLFTGFFLFRREMANQAFQD
EPKTISAIVIKPDTIKVNGDSLSFRGHSNGRTYQAFYKIQSEKGKIAFQKLSDQLLLEIDGDLSLAEDQRNFSGFDYRAY
LKTQGIYRILKINQIKSSQHFSSLNPWDWLSVWRRKALVYIKENFPSPMSHYMTGLLFGDLDTDFAEMNELYSSLGIIHL
FALSGMQVGYFMDGFRRILLKSGLKRETVDWIQLPFSFLYAGLTGFSVSVVRSLVQKLLSQFGVTKLDNFALTIMLLAMF
MPNFLLTTGGVLSCAYAFVISVMDFEHLPSMRKVLAESLTISLGILPILIFYFSEFQPWSILLTFLFSVVFDLFMLPALT
FIFVLSPLLKITQVNVLFELLEGLIRWTASISSRPVIFGQPSIWMMLGLLITLGLLYDFRRQKKVVTLLSLVLALLFFLT
KHPLQNEITVIDIGQGDSIFLRDWRGKSVLIDVGGRVEIGKKEAWQKRIFSTNAEKTLIPYLKSRGVSRLDVLVLTHTDT
DHMGDMLEVAKHFSIKEIYVSKGSLTQSDFVEKLERMQTRVHAVEVGDNFPIFDGALQVLYPEETGDGSNDDSVVLYGQF
FGTSFLFTGDLEEKGEATLMRRFPQLKVDVLKAGHHGSKGSSSPEFLHQLQPKIALISAGRNNRYKHPHQETLDRFKNIQ
TQIFRTDEQGAIRFRGWGSWEIETVK

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=430220 HBA50_RS06650 WP_045499349.1 1329457..1331697(-) (comEC/celB) [Streptococcus cristatus ATCC 51100]
ATGTCACAGTGGATAAATAAACTTCCCATCAAACCCATCTATTTTTGTCTTTTGCTGGTGCTGACCTACTTTGCGATTTA
CACTAGTAGTCTACTAGCCTATCTAGGTTTAGCAGTCCTCCTTGTTCGGCTCTTTTGGCTTTATTCGACTAGAAATAGTC
TGCTTGTTTTGGTGCTTTTGAGTCTCTTTACAGGATTTTTCCTATTTCGGAGAGAAATGGCTAATCAAGCCTTTCAAGAT
GAGCCGAAAACCATCTCTGCCATTGTGATCAAGCCAGATACAATCAAAGTCAATGGCGACTCGCTTTCTTTTCGCGGTCA
TTCTAATGGTCGAACTTATCAGGCCTTTTATAAAATCCAGTCAGAAAAGGGAAAAATCGCTTTTCAAAAGCTGAGCGATC
AACTGCTTTTGGAGATTGATGGAGATCTTAGTTTAGCAGAAGACCAGCGCAATTTTTCAGGCTTTGACTATCGGGCTTAT
CTAAAAACGCAGGGGATTTACAGGATTTTGAAAATCAATCAAATCAAGTCCAGTCAGCATTTTAGCAGTCTTAATCCTTG
GGACTGGCTGTCGGTCTGGCGCAGAAAAGCCTTGGTTTATATCAAGGAAAATTTTCCTAGCCCCATGAGCCACTATATGA
CTGGACTTTTGTTTGGTGATTTGGACACAGATTTTGCTGAGATGAATGAACTTTATTCTAGTCTGGGGATTATCCATCTC
TTTGCCCTATCGGGCATGCAGGTCGGCTATTTCATGGATGGTTTTCGCAGAATTCTCCTCAAATCTGGTTTGAAAAGAGA
GACCGTTGATTGGATACAGCTGCCCTTTTCCTTCCTCTATGCGGGTTTGACGGGCTTTTCAGTATCGGTCGTGAGGAGTT
TAGTACAAAAGCTGCTCTCGCAGTTTGGTGTGACTAAGCTGGACAACTTTGCTTTGACAATCATGCTCTTAGCCATGTTC
ATGCCCAATTTTCTCTTGACGACGGGTGGCGTTCTTTCCTGTGCCTATGCTTTTGTCATCTCTGTCATGGATTTTGAGCA
TTTACCTTCTATGAGAAAGGTGCTGGCAGAAAGTTTGACCATTTCACTGGGAATTTTGCCGATTCTGATTTTCTATTTTT
CAGAGTTTCAGCCTTGGTCTATTCTGCTGACCTTTCTATTCTCAGTTGTTTTTGATCTTTTTATGCTTCCAGCCCTGACC
TTTATTTTTGTCCTATCACCTCTTTTGAAAATCACTCAGGTCAATGTCTTATTTGAACTGCTGGAAGGGCTAATCCGTTG
GACAGCCTCTATTTCTTCTCGACCAGTGATTTTCGGTCAGCCATCTATCTGGATGATGCTAGGCCTGCTTATCACTCTTG
GCTTGCTCTATGATTTTCGCAGACAGAAGAAAGTTGTGACCTTACTTAGCTTGGTTCTTGCTCTGCTATTTTTTCTCACA
AAGCATCCTCTACAAAATGAAATTACAGTTATTGATATTGGGCAGGGGGATAGCATTTTCTTGCGCGATTGGCGGGGAAA
ATCTGTTCTGATTGATGTAGGTGGTCGAGTGGAGATTGGCAAGAAAGAAGCATGGCAGAAGCGGATTTTTTCGACAAATG
CAGAAAAGACCTTGATTCCCTATCTGAAAAGTCGGGGAGTGAGCCGCTTGGATGTGCTGGTTTTGACCCACACCGATACG
GACCATATGGGAGATATGCTGGAAGTAGCCAAGCATTTTTCTATAAAGGAAATTTATGTATCTAAGGGAAGTTTGACCCA
GTCGGATTTTGTGGAGAAACTGGAGCGTATGCAAACAAGAGTTCATGCGGTAGAAGTAGGAGATAACTTTCCGATTTTTG
ATGGAGCATTGCAAGTTCTTTATCCTGAGGAGACGGGCGACGGCAGTAATGACGACTCTGTCGTCTTATATGGACAATTT
TTTGGAACCAGCTTTTTGTTTACGGGAGATTTAGAGGAGAAAGGCGAAGCTACCTTGATGCGGCGTTTTCCGCAACTCAA
GGTGGATGTCTTAAAAGCAGGACACCACGGTTCTAAAGGATCCTCTAGCCCAGAATTTTTACATCAGCTTCAGCCCAAAA
TTGCCCTCATTTCTGCAGGTAGGAATAACCGCTACAAGCATCCTCATCAGGAAACTCTGGACAGATTTAAGAACATTCAG
ACACAGATTTTCCGTACAGATGAGCAAGGAGCTATTCGCTTCCGTGGCTGGGGTTCATGGGAAATCGAAACGGTAAAGTA
A

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(31-175)

Competence protein (Competence)

(216-460)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

56.627

100

0.567
  comEC/celB Streptococcus mitis NCTC 12261

56.568

100

0.566
  comEC/celB Streptococcus pneumoniae TIGR4

55.957

100

0.56
  comEC/celB Streptococcus pneumoniae Rx1

55.154

100

0.552
  comEC/celB Streptococcus pneumoniae D39

55.154

100

0.552
  comEC/celB Streptococcus pneumoniae R6

55.154

100

0.552
  comEC Lactococcus lactis subsp. cremoris KW2

47.383

99.866

0.473