Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   HBA50_RS05165 Genome accession   NZ_CP050133
Coordinates   1052280..1053122 (-) Length   280 a.a.
NCBI ID   WP_045497389.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1047280..1058122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS05150 (HBA50_05150) trmFO 1048109..1049443 (-) 1335 WP_045497382.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  HBA50_RS05155 (HBA50_05155) - 1049540..1050031 (-) 492 WP_045497385.1 hypothetical protein -
  HBA50_RS05160 (HBA50_05160) topA 1050102..1052195 (-) 2094 WP_125381931.1 type I DNA topoisomerase -
  HBA50_RS05165 (HBA50_05165) dprA/cilB/dalA 1052280..1053122 (-) 843 WP_045497389.1 DNA-processing protein DprA Machinery gene
  HBA50_RS05170 (HBA50_05170) - 1053227..1053790 (-) 564 Protein_1013 sugar O-acetyltransferase -
  HBA50_RS05175 (HBA50_05175) - 1053820..1054587 (-) 768 WP_045497392.1 ribonuclease HII -
  HBA50_RS05180 (HBA50_05180) ylqF 1054574..1055425 (-) 852 WP_045497395.1 ribosome biogenesis GTPase YlqF -
  HBA50_RS05185 (HBA50_05185) - 1055531..1056445 (-) 915 WP_045497398.1 MBL fold metallo-hydrolase -
  HBA50_RS05190 (HBA50_05190) - 1056449..1057561 (-) 1113 WP_045497400.1 acyl-CoA dehydrogenase family protein -

Sequence


Protein


Download         Length: 280 a.a.        Molecular weight: 31175.94 Da        Isoelectric Point: 6.3463

>NTDB_id=430217 HBA50_RS05165 WP_045497389.1 1052280..1053122(-) (dprA/cilB/dalA) [Streptococcus cristatus ATCC 51100]
MNNFEIYKMKKAGLTNQQVLNILRYAENKEGELSLRDKAVVSECRNPALFMEKYKRLDLPALKEEFERFPSFSILDDVYP
WDLCEIYDAPTLLFYQGNLNLLEMPKIAVVGSRDSSKQGNAAVQKIIKELNNELVIVSGLARGIDTVAHMAALQNGGQTI
AVIGTGLDVFYPKANQKLQVYIGKNHLLMTEYGPGEQPLKFHFPERNRIIAGLCRGVIVAEAKMRSGSLITCERAMEEGR
DVFAIPGSILDGKSDGCHHLIQEGAKCITSGSDVLSEFQF

Nucleotide


Download         Length: 843 bp        

>NTDB_id=430217 HBA50_RS05165 WP_045497389.1 1052280..1053122(-) (dprA/cilB/dalA) [Streptococcus cristatus ATCC 51100]
ATGAATAATTTTGAAATTTATAAAATGAAAAAAGCTGGCTTAACCAATCAACAGGTCTTAAATATCTTGAGATATGCAGA
AAATAAAGAGGGAGAGCTATCTTTGCGAGACAAGGCCGTCGTCTCTGAGTGTCGCAATCCCGCACTCTTTATGGAAAAAT
ACAAGCGACTTGATTTACCAGCCTTGAAAGAAGAATTTGAACGTTTTCCGTCCTTTTCAATCTTGGATGATGTGTATCCT
TGGGATCTATGCGAGATTTACGATGCACCGACTTTGCTATTTTATCAAGGAAATCTAAACTTGCTAGAAATGCCCAAGAT
AGCGGTTGTTGGCAGTAGAGACAGCAGTAAGCAGGGCAATGCTGCTGTGCAGAAAATCATTAAGGAGTTGAATAATGAGC
TGGTTATCGTCAGCGGTTTGGCTCGTGGGATTGATACCGTGGCCCACATGGCTGCCCTGCAAAATGGTGGCCAAACTATT
GCTGTCATTGGGACGGGACTAGATGTCTTCTATCCCAAGGCTAATCAAAAACTGCAGGTTTATATTGGCAAAAATCATTT
ATTGATGACAGAGTATGGTCCAGGTGAGCAACCCTTGAAATTCCATTTTCCAGAGCGAAATCGCATCATCGCTGGTCTTT
GCCGAGGAGTCATTGTGGCGGAAGCCAAGATGCGCTCAGGCAGCCTGATTACTTGTGAGCGAGCCATGGAAGAAGGGCGG
GATGTCTTTGCTATTCCGGGGTCAATTTTAGATGGAAAATCTGACGGTTGTCATCATTTGATTCAAGAGGGCGCAAAGTG
CATTACATCAGGCTCTGACGTCCTATCTGAGTTCCAATTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

76.429

100

0.764

  dprA/cilB/dalA Streptococcus pneumoniae Rx1

76.071

100

0.761

  dprA/cilB/dalA Streptococcus pneumoniae D39

76.071

100

0.761

  dprA/cilB/dalA Streptococcus pneumoniae R6

76.071

100

0.761

  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

76.071

100

0.761

  dprA/cilB/dalA Streptococcus mitis SK321

75.714

100

0.757

  dprA Streptococcus mutans UA159

67.857

100

0.679

  dprA Lactococcus lactis subsp. cremoris KW2

54.643

100

0.546

  dprA Bacillus subtilis subsp. subtilis str. 168

40.637

89.643

0.364