Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   HBA50_RS02680 Genome accession   NZ_CP050133
Coordinates   526020..526685 (+) Length   221 a.a.
NCBI ID   WP_045500912.1    Uniprot ID   -
Organism   Streptococcus cristatus ATCC 51100     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521020..531685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA50_RS02655 (HBA50_02655) - 521174..522574 (+) 1401 WP_045500955.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  HBA50_RS02660 (HBA50_02660) - 522574..522936 (+) 363 WP_005591890.1 S1 RNA-binding domain-containing protein -
  HBA50_RS02665 (HBA50_02665) cysK 522984..523913 (-) 930 WP_045500906.1 cysteine synthase A -
  HBA50_RS02670 (HBA50_02670) - 524030..524665 (-) 636 WP_045500908.1 YigZ family protein -
  HBA50_RS02675 (HBA50_02675) comFA/cflA 524722..526023 (+) 1302 WP_045500910.1 DEAD/DEAH box helicase Machinery gene
  HBA50_RS02680 (HBA50_02680) comFC/cflB 526020..526685 (+) 666 WP_045500912.1 ComF family protein Machinery gene
  HBA50_RS02685 (HBA50_02685) raiA 526767..527309 (+) 543 WP_045500914.1 ribosome-associated translation inhibitor RaiA -
  HBA50_RS02690 (HBA50_02690) - 527459..530572 (+) 3114 WP_045500916.1 DEAD/DEAH box helicase -
  HBA50_RS02695 (HBA50_02695) - 530614..531276 (+) 663 WP_045500918.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25523.56 Da        Isoelectric Point: 7.4502

>NTDB_id=430206 HBA50_RS02680 WP_045500912.1 526020..526685(+) (comFC/cflB) [Streptococcus cristatus ATCC 51100]
MRNCLLCSQAVEENRTFSSLILLQKEQNIICKNCRAGFEAISSIHCPRCWKEGETEVCSDCQIWEAQGYLVKHQACFLYN
DLMKDFFSKYKFQGDYLLRFVFAEVLKKSLRNFKEYTLVPIPVSPEKHQSRGFNQVEGFLQAAGLPYKQLLEKEDMIAQS
SKNREERLNSQQCFTLAKDVLLPEKILLIDDVYTTGKTLQLARELLLEAGVKEVLTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=430206 HBA50_RS02680 WP_045500912.1 526020..526685(+) (comFC/cflB) [Streptococcus cristatus ATCC 51100]
ATGAGAAATTGCCTGTTATGCAGCCAGGCAGTAGAAGAAAATAGGACTTTTTCTTCCTTGATTTTATTGCAAAAAGAACA
AAATATAATTTGTAAGAATTGTCGAGCAGGATTTGAAGCGATTTCCTCTATCCATTGCCCACGCTGCTGGAAGGAGGGAG
AGACGGAAGTCTGCTCGGATTGTCAAATATGGGAAGCGCAAGGCTATTTGGTGAAGCATCAGGCTTGCTTTCTTTATAAT
GATTTGATGAAGGATTTCTTCAGCAAATACAAATTTCAAGGGGATTATCTTTTAAGATTTGTGTTTGCAGAAGTTCTCAA
AAAAAGTCTCAGAAACTTCAAAGAATATACTCTGGTTCCTATTCCAGTCAGTCCTGAAAAACATCAAAGCCGAGGTTTTA
ATCAGGTGGAAGGCTTCTTGCAAGCAGCTGGCTTGCCTTATAAACAGTTGCTTGAAAAGGAAGATATGATTGCCCAATCC
AGTAAAAATCGCGAAGAACGATTAAACAGTCAGCAATGTTTCACATTGGCAAAAGATGTCCTTCTACCAGAAAAAATTCT
TCTGATAGACGATGTGTACACGACTGGAAAAACCTTGCAATTAGCTCGAGAATTATTGCTGGAAGCAGGTGTGAAAGAAG
TTTTGACATTTTCACTCGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

51.376

98.643

0.507
  comFC/cflB Streptococcus pneumoniae D39

51.376

98.643

0.507
  comFC/cflB Streptococcus pneumoniae R6

51.376

98.643

0.507
  comFC/cflB Streptococcus mitis SK321

51.376

98.643

0.507
  comFC/cflB Streptococcus pneumoniae TIGR4

51.376

98.643

0.507
  comFC/cflB Streptococcus mitis NCTC 12261

51.376

98.643

0.507