Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BDGL_003129 Genome accession   NC_016603
Coordinates   3361862..3363349 (-) Length   495 a.a.
NCBI ID   YP_004997397.1    Uniprot ID   F0KK29
Organism   Acinetobacter pittii PHEA-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3356862..3368349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_003123 - 3356892..3357080 (+) 189 YP_004997391.1 hypothetical protein -
  BDGL_003124 - 3357104..3357931 (+) 828 YP_004997392.1 hypothetical protein -
  BDGL_003125 dapA1 3357973..3358851 (-) 879 YP_004997393.1 dihydrodipicolinate synthase -
  BDGL_003126 - 3358867..3359643 (-) 777 YP_004997394.1 hypothetical protein -
  BDGL_003127 mocR 3359755..3361188 (+) 1434 YP_004997395.1 GntR family transcriptional regulator -
  BDGL_003128 yieF 3361213..3361758 (-) 546 YP_004997396.1 NAD(P)H dehydrogenase (quinone) -
  BDGL_003129 comM 3361862..3363349 (-) 1488 YP_004997397.1 magnesium chelatase family protein Machinery gene
  BDGL_003130 - 3363415..3363642 (-) 228 YP_004997398.1 hypothetical protein -
  BDGL_003131 glnK 3363921..3364259 (+) 339 YP_004997399.1 regulatory protein for nitrogen assimilation by glutamine synthetase -
  BDGL_003132 amtB 3364317..3365711 (+) 1395 YP_004997400.1 ammonium transport protein -
  BDGL_003133 nrdR 3365869..3366327 (+) 459 YP_004997401.1 ATP-cone domain-containing protein -
  BDGL_003134 ribD 3366343..3367428 (+) 1086 YP_004997402.1 bifunctional protein ribD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54514.62 Da        Isoelectric Point: 7.7209

>NTDB_id=42993 BDGL_003129 YP_004997397.1 3361862..3363349(-) (comM) [Acinetobacter pittii PHEA-2]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIAIGILIASGQLPENCAEDFELIGELALDGHVRPVSGTLTLAMACQQAKHKMLLPLDNSQDICHLPNLESYPVSHL
KEVCDHFLGMKSLSSIEPATTSNQMPYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLSN
QETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSQESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTAVRQRVIYAYKQQMQRQDCLNQALSPKQLEQYAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEMIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=42993 BDGL_003129 YP_004997397.1 3361862..3363349(-) (comM) [Acinetobacter pittii PHEA-2]
ATGTCTTTTTCTAAAATTTATACACGGGGACTTTTAGGTTTACATGCACCTCTGATTGAAGTTGAGGTACATGTGAGTCA
AGGCTTACCTTCTCTTACTATTGTCGGCCTAGCAGAGGCGGCGGTAAGAGAAAGTAAAGACCGAGTTCGCTCAGCCATTA
TTAATAGTGGATTTCAATTTCCAACAAAACGGCTGACCATTAATCTTGCACCAGCAGATTTGCCCAAAGATGGATCACGT
CTAGATTTACCTATTGCTATAGGTATTTTAATTGCATCTGGCCAGCTCCCAGAAAACTGTGCCGAAGATTTTGAATTAAT
TGGTGAATTAGCTTTAGATGGCCATGTAAGACCAGTGTCAGGCACGTTAACTTTGGCAATGGCGTGTCAACAGGCCAAGC
ATAAAATGCTTTTACCTCTCGATAATAGTCAGGATATTTGCCATTTACCGAATCTTGAATCTTATCCCGTGAGCCATTTA
AAAGAAGTTTGTGATCATTTCTTGGGCATGAAATCACTATCTTCGATTGAACCTGCAACGACCTCAAACCAAATGCCTTA
TAAATTTGATCTGGCAGATGTAAAAGGTCAGCTACGTCCACGTCGCGCACTAGAAATTGCCGCCGCAGGCGGGCACTCGC
TGCTCTTTAAAGGACCACCAGGTACAGGTAAGACTTTACTCGCTTCACGTCTTCCTTCAATTTTGCCACCCCTTTCTAAT
CAAGAAACGCTTGAAGTCGCGAGTATTTATTCTATTTCAAATACACCGCATACCTTTGGTCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCGATTGCACTAGTTGGGGGCGGTTCACATCCTAAACCGGGTGAAATTACCTTATCTCATTTAG
GGGTTTTGTTTTTAGATGAACTTCCCGAGTTTGACAGAAAAGTTCTAGAGGTCTTACGTCAGCCGCTTGAGTCAAAAGAA
ATCATTATTTCACGTGCAGCTCGGCAAATTACTTATCCTGCAAACTTTCAGCTCATTGCAGCAATGAACCCTTGTCCATG
TGGTTATGCGTTTAATCAAGACAGCCGTTGCCAATGTTCGCAAGAGAGTATCAAGCGCTATCAAAACCGTATATCGGGAC
CATTACTTGACCGTATCGATTTACATATTGATGTACCGCCTTTAAAAGCTCAAGAACTGCAAGATCCAACGCCTGCTGAA
GACTCTACGGCTGTAAGACAGCGTGTGATTTATGCTTATAAACAACAAATGCAAAGACAAGATTGTTTAAATCAAGCACT
TTCACCGAAACAACTTGAGCAATATGCTGTACTTGATAGTACTTCTCAACGAATGATTGAAATGGCTCAACAACGTTTGA
ATCTGTCGGCTCGTGCTTATCATCGTGTTTTACGGGTTGCTCGTACCATTGCCGATTTGGCGCAAAGTGAGATGATCCAA
AGTCCTCATCTTACAGAAGCGCTCTCTTATCGAGGCAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KK29

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.403

100

0.505
  comM Glaesserella parasuis strain SC1401

49.699

100

0.501
  comM Legionella pneumophila str. Paris

48.795

100

0.491
  comM Legionella pneumophila strain ERS1305867

48.795

100

0.491
  comM Haemophilus influenzae Rd KW20

48.297

100

0.487
  comM Vibrio campbellii strain DS40M4

47.475

100

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.924

100

0.467

Multiple sequence alignment