Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HA514_RS23385 Genome accession   NZ_CP050073
Coordinates   4862738..4864258 (+) Length   506 a.a.
NCBI ID   WP_121527228.1    Uniprot ID   -
Organism   Enterobacter kobei strain 070     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4857738..4869258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA514_RS23365 (HA514_23365) ilvE 4859304..4860233 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  HA514_RS23370 (HA514_23370) ilvM 4860252..4860515 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  HA514_RS23375 (HA514_23375) ilvG 4860512..4862158 (-) 1647 WP_045135411.1 acetolactate synthase 2 catalytic subunit -
  HA514_RS23380 (HA514_23380) ilvL 4862298..4862396 (-) 99 WP_001311244.1 ilv operon leader peptide -
  HA514_RS23385 (HA514_23385) comM 4862738..4864258 (+) 1521 WP_121527228.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HA514_RS23390 (HA514_23390) - 4864288..4864626 (-) 339 WP_014885680.1 DUF413 domain-containing protein -
  HA514_RS23395 (HA514_23395) hdfR 4864745..4865566 (+) 822 WP_014885681.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55101.18 Da        Isoelectric Point: 7.2973

>NTDB_id=429913 HA514_RS23385 WP_121527228.1 4862738..4864258(+) (comM) [Enterobacter kobei strain 070]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLCSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELSEPEECDNVIADTPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQKGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNMEDAVWLEETLTRFGLSIRAWQRLLKVARTIADVEGCSDI
QRKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=429913 HA514_RS23385 WP_121527228.1 4862738..4864258(+) (comM) [Enterobacter kobei strain 070]
ATGTCACTGTCAGTTGTTTATACACGTGCGGCTCTCGGGGTGAAGGCACCGCTGATTTCTGTAGAGGTTCATCTGAGTAA
TGGGCTACCCGGGCTCACGCTCGTCGGGCTACCTGAAACGACGGTTAAAGAAGCCCGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTGGCTCCCGCCGATCTGCCCAAAGAGGGAGGACGA
TATGATTTACCTATCGCGATTGCGCTTCTCGCAGCCTCTGAGCAGCTTAATACGACCAGGCTATGCTCGTACGAGTTTGT
GGGAGAACTCGCGCTCACAGGCGCGTTAAGGGGCGTTCCCGGTGCGATATCGGGCGCGCTGGAAGCTATACGTGCAGGAC
GGCAAATCATTGTCGCGAATGAAAATGCATCAGAAGTAAGTCTTATCGCCGAGAAGGGGTGTCTTGTCGCAGGGCATTTA
CAGGAAGTTTGCGCCTGGCTGGAAGGGCGCCATGAACTGTCCGAGCCGGAAGAGTGTGACAATGTTATAGCCGATACCCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TTTTGATCGGCCCGCCTGGTACGGGTAAAACGATGCTGGCGAGCAGGCTGAGTGGCTTGCTGCCACCGCTCAATAATCAT
GAAGCGCTGGAGAGTGCCGCCATTTATAGCCTTATCAGTTCTACCTCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCACCTCATCATAGCGCTTCACTGACGGCGATGGTCGGCGGTGGATCTATTCCTGGGCCGGGTGAAATATCACTGGCGC
ACAATGGCATTCTGTTTCTCGACGAGCTGCCTGAGTTTGAGCGCCGCGTCCTGGATGCCCTGAGAGAACCCATTGAATCT
GGAGAGATACACATCTCACGCACGCGAGCCAAAATAAGCTATCCCGCGCAGTTTCAGCTGGTCGCTGCGATGAATCCCAG
CCCTACGGGTCATTATCAGGGCAACCATAACCGCTGTACGCCTGAGCAGACATTGCGCTATCTGGGAAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGCCTGCTCAGGCAAAAAGGCATCACGGGT
GAAAGCTCAGCAGATGTACGCGAGCGGGTCATTGCTGCCCAGACGCGACAATATGCCCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACATGGAGGATGCGGTTTGGCTGGAGGAAACCTTGACGCGTT
TTGGTCTTTCTATACGCGCGTGGCAGCGTTTGCTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGTTGTAGTGACATT
CAGAGGAAACACTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTCCATCTGCAGAAGTTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443