Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HA514_RS01445 Genome accession   NZ_CP050073
Coordinates   307094..307621 (+) Length   175 a.a.
NCBI ID   WP_121527137.1    Uniprot ID   -
Organism   Enterobacter kobei strain 070     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 302094..312621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HA514_RS01425 (HA514_01425) aphA 302418..303131 (+) 714 WP_014882148.1 acid phosphatase AphA -
  HA514_RS01430 (HA514_01430) - 303245..303661 (+) 417 WP_014882149.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  HA514_RS01435 (HA514_01435) - 303664..304017 (+) 354 WP_014882150.1 MmcQ/YjbR family DNA-binding protein -
  HA514_RS01440 (HA514_01440) uvrA 304020..306842 (-) 2823 WP_023331804.1 excinuclease ABC subunit UvrA -
  HA514_RS01445 (HA514_01445) ssb 307094..307621 (+) 528 WP_121527137.1 single-stranded DNA-binding protein SSB1 Machinery gene
  HA514_RS01450 (HA514_01450) - 307681..307962 (-) 282 WP_014882153.1 YjcB family protein -
  HA514_RS01455 (HA514_01455) - 308490..310055 (+) 1566 WP_166479139.1 EAL domain-containing protein -
  HA514_RS01460 (HA514_01460) soxS 310062..310388 (-) 327 WP_008503387.1 superoxide response transcriptional regulator SoxS -
  HA514_RS01465 (HA514_01465) soxR 310487..310945 (+) 459 WP_023331806.1 redox-sensitive transcriptional activator SoxR -
  HA514_RS01470 (HA514_01470) - 311249..311920 (+) 672 WP_121527133.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18763.82 Da        Isoelectric Point: 5.2456

>NTDB_id=429895 HA514_RS01445 WP_121527137.1 307094..307621(+) (ssb) [Enterobacter kobei strain 070]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGVAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=429895 HA514_RS01445 WP_121527137.1 307094..307621(+) (ssb) [Enterobacter kobei strain 070]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACTG
AATGGCACCGCGTGGTGCTGTTTGGCAAACTGGCAGAAGTTGCCGGTGAGTATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAACTGCGCACCCGTAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACCGAAGTTGTGGTAAACGTTGG
CGGTACCATGCAGATGCTGGGCGGCCGTCAGGGCGGTGGCGCACCAGCAGGTGGCGGTCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGTGGCAACCAGTTCAGCGGCGTCGCACAGTCTCGTCCGCAGCAGCAGTCTGCTCCGGCA
CCGTCTAACGAGCCACCAATGGACTTCGACGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.111

100

0.783
  ssb Glaesserella parasuis strain SC1401

55.978

100

0.589
  ssb Neisseria meningitidis MC58

46.629

100

0.474
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.474
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.366