Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BDGL_002632 Genome accession   NC_016603
Coordinates   2827586..2828338 (-) Length   250 a.a.
NCBI ID   YP_004996900.1    Uniprot ID   F0KFY7
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2822586..2833338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002629 pilE 2822805..2823230 (-) 426 YP_004996897.1 pilin like competence factor Machinery gene
  BDGL_002630 pilY2 2823227..2823709 (-) 483 YP_004996898.1 pilin like competence factor Machinery gene
  BDGL_002631 pilY1 2823720..2827478 (-) 3759 YP_004996899.1 putative competence factor involved in DNA binding and uptake (ComC) Machinery gene
  BDGL_002632 pilX 2827586..2828338 (-) 753 YP_004996900.1 putative type IV fimbrial biogenesis protein Machinery gene
  BDGL_002633 pilW 2828392..2829339 (-) 948 YP_004996901.1 pilin like competence factor Machinery gene
  BDGL_002634 pilV 2829393..2829953 (-) 561 YP_004996902.1 type IV fimbrial biogenesis protein PilV Machinery gene
  BDGL_002635 - 2829978..2830577 (+) 600 YP_004996903.1 hypothetical protein -
  BDGL_002636 ispH 2830590..2831540 (-) 951 YP_004996904.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BDGL_002637 gmk 2831663..2832292 (+) 630 YP_004996905.1 guanylate kinase -
  BDGL_002638 rpoZ 2832365..2832643 (+) 279 YP_004996906.1 RNA polymerase subunit omega -
  BDGL_002639 - 2832682..2832837 (+) 156 YP_004996907.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26431.84 Da        Isoelectric Point: 5.7417

>NTDB_id=42979 BDGL_002632 YP_004996900.1 2827586..2828338(-) (pilX) [Acinetobacter pittii PHEA-2]
MLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVIGAALKEHESNPGAEYNFCY
KPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTDAASDIPGSNLPRGTNTSEG
TQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAECLANHNVPFSTQVQEFNYTN
KLTQITAPGS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=42979 BDGL_002632 YP_004996900.1 2827586..2828338(-) (pilX) [Acinetobacter pittii PHEA-2]
GTGCTTATTATTTTATTGATTGTTATTTCTGTAGGCGTTTTAGCAATAAGAGTAGCTATTGTTTCTTTAAAAGTTGCTAC
CAATAGTCAAGTGAGCCAATTAAATTTTCAGTCATCTGACACACCTTTAGAACTCATTGTGCAGATGAATCCTACTACCC
TAACTAATATTACTAATGTGATTGGTGCCGCACTTAAAGAGCACGAAAGTAACCCTGGTGCGGAATACAACTTTTGTTAT
AAGCCTGTTTCTACAGCAACAAATTTTGCTCAGACCAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCAGT
TGTCGAAGATGGCGGAGTGGCTGGTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAG
TTGCTGTAAGTGTTCCAACAGATGCTGCTAGCGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGT
ACGCAACTACCTAAAAGCATGTTGTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTACCAGCCTATGCATCTAC
CTCTATCGAAACTTTACAAAGAGATTGTTTAAGTACGAGTTCAGCAAAAATTAGCGACAATTTTGATACCGCCTTAACGG
CTAAACAAACATTGGCGGAGTGTTTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAATTATACCAAT
AAACTCACTCAAATTACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KFY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

91.213

95.6

0.872

Multiple sequence alignment