Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   BDGL_002633 Genome accession   NC_016603
Coordinates   2828392..2829339 (-) Length   315 a.a.
NCBI ID   YP_004996901.1    Uniprot ID   F0KFY8
Organism   Acinetobacter pittii PHEA-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2823392..2834339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BDGL_002631 pilY1 2823720..2827478 (-) 3759 YP_004996899.1 putative competence factor involved in DNA binding and uptake (ComC) Machinery gene
  BDGL_002632 pilX 2827586..2828338 (-) 753 YP_004996900.1 putative type IV fimbrial biogenesis protein Machinery gene
  BDGL_002633 pilW 2828392..2829339 (-) 948 YP_004996901.1 pilin like competence factor Machinery gene
  BDGL_002634 pilV 2829393..2829953 (-) 561 YP_004996902.1 type IV fimbrial biogenesis protein PilV Machinery gene
  BDGL_002635 - 2829978..2830577 (+) 600 YP_004996903.1 hypothetical protein -
  BDGL_002636 ispH 2830590..2831540 (-) 951 YP_004996904.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BDGL_002637 gmk 2831663..2832292 (+) 630 YP_004996905.1 guanylate kinase -
  BDGL_002638 rpoZ 2832365..2832643 (+) 279 YP_004996906.1 RNA polymerase subunit omega -
  BDGL_002639 - 2832682..2832837 (+) 156 YP_004996907.1 hypothetical protein -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 33630.87 Da        Isoelectric Point: 5.6300

>NTDB_id=42980 BDGL_002633 YP_004996901.1 2828392..2829339(-) (pilW) [Acinetobacter pittii PHEA-2]
MVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPILTDTTPWGGVVLTGSTATN
NNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSDAAVQSDQLTIQFIAPTNMTNCEGVNVLAGDLIV
ERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKNAAGNFAYYTIPQYRAAAQ
AARDATPSVMPPRILSIQMSVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYNLTIALRNAMGESL

Nucleotide


Download         Length: 948 bp        

>NTDB_id=42980 BDGL_002633 YP_004996901.1 2828392..2829339(-) (pilW) [Acinetobacter pittii PHEA-2]
ATGGTTGCATTGGCTTTAGGTCTAATTTTAGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCT
ACAAAAAGCAAATGCTGAAATACAAGATAGCGGTATTTTTGGTTTGGAATATATTGCCCGTGATATACGGCTTCTAAATT
ATGGAAATGTAACCAACCCAATATTAACTGATACAACCCCTTGGGGCGGTGTTGTATTAACTGGCTCAACTGCAACCAAT
AACAACAATGTTAATTTTGTCCCTAACGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGAGA
TACGGTGAGTACTGTGAGTAATCACTGGAAAGGTCTTTCAAATATACAGAACAGTTCAGATGCTGCTGTGCAAAGTGATC
AGCTGACTATCCAATTTATTGCACCTACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTA
GAGCGTTATTTTTTACGTCTGGATAGCAATGGTAGTTCCCAGCAAGACTATGCACTTGCATGTGATGCAAATACTCCCTC
TGCTGTAGCCACAGCTCAACCGACCACTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATT
TCCATGTGCTGTTTGGTGCAAAAAATGCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAG
GCTGCCCGAGATGCCACACCATCTGTGATGCCGCCACGAATTCTTTCAATACAAATGTCTGTATTAGCGCGCTCTACTAA
TAATGCCCAAAGCAAAGCAATAGATCCTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAA
CTCGATTCTTACGCCGCACTTATAACTTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(163-309)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0KFY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

86.032

100

0.86

Multiple sequence alignment